PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g08740

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 444aa MW: 50088 Da PI: 6.2104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g08740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.5e-52	27	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv++yLk+kv++k++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky +g r nrat++gyWkatgkd+e+ + + Tp3g08740 27 LAPGFRFHPTDEELVSYYLKRKVQNKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIRR-DIL 124 579**********************999.99**********8544899999*********************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l g+kktLvf++grap+g +t+Wvmheyrl Tp3g08740 125 LLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-58	21	179	IPR003441	NAC domain
PROSITE profile	PS51005	56.362	27	178	IPR003441	NAC domain
Pfam	PF02365	9.3E-27	29	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MGRESVAAVS SPPTATARGT TAAATSLAPG FRFHPTDEEL VSYYLKRKVQ NKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDILLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLAVYETE KNGNLVQDAY VLCRVFHKNN 180 IGPPSGNRYA PFMEEEWADD GVALIPGVDV SVRVELLTNG NNQMDQEIQS AGNDLININE 240 PPRDATPMGI ERNHQNHHGN ALKSQENNIN KHDEVEEALK REHAEEEDDP PPPLCVLNKE 300 APLPLLQYKR RRQNESNNNS SRTTQDHCSS TTTTVDNTII SSSAAATNTA ISALLEFSLM 360 GLSDKKENLQ QPLRPHKEAS PPPLASPEER VNDLEKELHQ MSVEKETFKL EMMSAEAMIS 420 ILQSRIDALR QENDELKKNS ANGQ

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MGRESVAAVS SPPTATARGT TAAATSLAPG FRFHPTDEEL VSYYLKRKVQ NKPVRFDAIG  60
EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDILLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLAVYETE KNGNLVQDAY VLCRVFHKNN  180
IGPPSGNRYA PFMEEEWADD GVALIPGVDV SVRVELLTNG NNQMDQEIQS AGNDLININE  240
PPRDATPMGI ERNHQNHHGN ALKSQENNIN KHDEVEEALK REHAEEEDDP PPPLCVLNKE  300
APLPLLQYKR RRQNESNNNS SRTTQDHCSS TTTTVDNTII SSSAAATNTA ISALLEFSLM  360
GLSDKKENLQ QPLRPHKEAS PPPLASPEER VNDLEKELHQ MSVEKETFKL EMMSAEAMIS  420
ILQSRIDALR QENDELKKNS ANGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-45	26	180	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-45	26	180	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-45	26	180	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-45	26	180	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-45	26	180	19	170	NAC domain-containing protein 19
3swm_B	4e-45	26	180	19	170	NAC domain-containing protein 19
3swm_C	4e-45	26	180	19	170	NAC domain-containing protein 19
3swm_D	4e-45	26	180	19	170	NAC domain-containing protein 19
3swp_A	4e-45	26	180	19	170	NAC domain-containing protein 19
3swp_B	4e-45	26	180	19	170	NAC domain-containing protein 19
3swp_C	4e-45	26	180	19	170	NAC domain-containing protein 19
3swp_D	4e-45	26	180	19	170	NAC domain-containing protein 19
4dul_A	3e-45	26	180	16	167	NAC domain-containing protein 19
4dul_B	3e-45	26	180	16	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269\|PubMed:19237690, ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990, ECO:0000269\|PubMed:28207953}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00612	ChIP-seq	Transfer from AT3G10490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g08740

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269\|PubMed:16553893}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750304.1	0.0	NAC domain-containing protein 71-like isoform X1
Refseq	XP_013750305.1	0.0	NAC domain-containing protein 71-like isoform X2
Swissprot	Q9SQY0	0.0	NAC52_ARATH; NAC domain containing protein 52
TrEMBL	A0A397ZF44	0.0	A0A397ZF44_BRACM; Uncharacterized protein
STRING	Bostr.22252s0011.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.2	0.0	NAC domain containing protein 52

Publications ? help Back to Top
Higgins JD,Ferdous M,Osman K,Franklin FC The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] Elmayan T, et al. Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]