PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g08730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 403aa MW: 43666 Da PI: 7.0961 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 184 | 206 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Tp3g08730 184 YQCKTCDRTFPSFQALGGHRASH 206 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00032 | 263 | 285 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Tp3g08730 263 HECGICGAEFTSGQALGGHMRRH 285 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-8 | 183 | 206 | No hit | No description |
Pfam | PF13912 | 2.4E-12 | 183 | 208 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 184 | 206 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 184 | 211 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 186 | 206 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-8 | 258 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 261 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.6E-11 | 262 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 263 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 263 | 285 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 265 | 285 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
METSEEAKSA AKEQSLILKG KRTKRQRPQS PIPFSIVPPM SLQEPDVEEE SASLVSKEKS 60 PNDEIDNDNK NDNNVLINGV TSSSSASSSS NNNATLKAAA DEEDQDMANC LILLAQGHSL 120 PHHNRNHQQP QPQQQTRQLM ISYQESGNNN NNAYRSSSRR FLETSSSNGT TTNGGGGRAG 180 YYVYQCKTCD RTFPSFQALG GHRASHKKPK AASGLHSDHD LKKSIYDDAV SLHLNNVLNT 240 TPNNNNNHRS LVVYGKASNN KVHECGICGA EFTSGQALGG HMRRHRGAVV AAAAASTATV 300 AVAATAPTAN TALSLSPMSF DQMSDGPVYP IQAPVKRARS AVVSLDLDLN LPAPEDENRV 360 NGLSFASKQE HEQEHEQTQQ NKQREEQKSL VLSSAPTLVD CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g08730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 0.0 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 0.0 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484714.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A397ZEM1 | 0.0 | A0A397ZEM1_BRACM; Uncharacterized protein | ||||
STRING | XP_010484714.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10470.1 | 1e-158 | C2H2 family protein |