PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g08350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 421aa    MW: 48054.2 Da    PI: 8.3482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g08350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.14.8e-2399201186
   trihelix   1 rWtkqevlaLiearremeerlr...rgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                +Wt+ +v++Li a+ +++++ +   + +              +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++  ++
  Tp3g08350  99 KWTDTMVRLLIMAVFYIGDEAGglgD-QtdakkknggggamlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGLL 197
                7**************66666653321.133445667777777**********************************************55999**99999 PP

   trihelix  83 dqle 86 
                d ++
  Tp3g08350 198 DTMD 201
                9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2097227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MESNVMFSGF SPRMLSLEMP QNPQNPVKFQ HPHPYASTAG DQQPMIKPLY PYASKAKQLS  60
PISGGDDDDR GSGSGSGCNP EDSVGTDGKR KVSQWHRMKW TDTMVRLLIM AVFYIGDEAG  120
GLGDQTDAKK KNGGGGAMLQ KKGKWKSVSR AMVEKGFSVS PQQCEDKFND LNKRYKRVND  180
ILGKGTACRV VENQGLLDTM DHVTPKLKDE VKKLLNSKHL FFKEMCAYHN SCGHLGGHDQ  240
PQPNQVPTQQ RPEQQSCFHA AESGKMARIA ESEEDDESDM AEDSESEMED TEEDEEETRK  300
KRRRREGVSA AVKRMREEAT RVLEDAGKSA WEKKEWMRRK AVEIEEKKVG YEWEAVEMEK  360
QRVKWMRYRG KKEREMEKAK LENQRRRLET ERMVLILRRR EIELSELQSS GKRVDPSSAT  420
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304RKKRRRR
2298305RKKRRRRE
3299304KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g08350
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407612.10.0uncharacterized protein LOC18023903
TrEMBLV4LF260.0V4LF26_EUTSA; Uncharacterized protein
STRINGXP_006407612.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors