PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g08220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family E2F/DP
Protein Properties Length: 281aa    MW: 31477.4 Da    PI: 6.8858
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g08220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.82.5e-2568148471
    E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 +Lr+++ k   ++ek+++ g++t+neva+eLv+e                d+kn+rRR+YD++NVL+a++li++ +k+ei+wkg
  Tp3g08220  68 GGLRQFSLK---VCEKVQSkGRTTYNEVANELVAEfavpnntgessdqqqdDEKNIRRRVYDAFNVLMAMDLITR-DKKEIQWKG 148
                689999999...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.5E-971281IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-4165152IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-3065148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2368148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-2068149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.5E-39151281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-33152259No hitNo description
PfamPF087812.1E-31152264IPR014889Transcription factor DP, C-terminal
CDDcd144581.27E-27153252IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKIGSKSSRM SHGSMPDQSV STSSSIDSPA IAMKTPTRDE GGNTQGASGG KKKKKRRCVA  60
GPDKSGRGGL RQFSLKVCEK VQSKGRTTYN EVANELVAEF AVPNNTGESS DQQQDDEKNI  120
RRRVYDAFNV LMAMDLITRD KKEIQWKGFP RNLEELKTEH LAYKKRMSTK ALYLQELDEH  180
HVGLENLIRR NEQLYSSDNV PSSAIALPLI LVETQPEAIV EVEISEDMQF VHLDFNSIPF  240
VVHDDYTVLK TMNLCERQTQ LQVSPVAGST SEPERSSMSE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3163152692PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056KKKKKRR
25156KKKKRR
35256KKKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g08220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636453.11e-109transcription factor-like protein DPB isoform X1
RefseqXP_023636454.11e-109transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-106DPB_ARATH; Transcription factor-like protein DPB
TrEMBLR0FF131e-108R0FF13_9BRAS; Uncharacterized protein
STRINGXP_006287929.11e-109(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-104Transcription factor DP