PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g06280

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 456aa MW: 50130.7 Da PI: 7.037

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g06280	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	260	307	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Tp3g06280 260 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 307 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.86E-10	254	311	No hit	No description
SuperFamily	SSF47459	5.5E-17	254	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-17	256	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	260	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDNELFTNAG VSHPSDMTSL SFSSSAMLNW TSMEAQPSTE QSIFDSALSS LVSSPTPSNS 60 NFSGGGGDNI VIRELAGKLG NIDEIDGAPA SSGNGSCHAA PMSSPSQRPM SVTRTTTPLV 120 EFSGDSGFAE RAARFSCFGS RSFNGRTNSP FPINNNNNGT VTAIEATNGK LTRVSSTPAF 180 KALASQSPAG ESSGDCSRKR KVKSKQNSPC PKLSKEVEEK EDSDSKRRRK SEESGEKTKS 240 LDPYKDFIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII 300 NYVQSLQRQV EFLSMKLSSV NTRLDFNMEA LMSKDIFSSS NNLMHHQRVL QLESSSETLL 360 DDHLNRTLQP NPNISSNNIM GSLETSETRS FISQLPTLTH FTHSISQFST FSEDDLHGII 420 HMGFEQNHIH EPNQMWNFYY AGPSKQVPSS HMKAEL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDNELFTNAG VSHPSDMTSL SFSSSAMLNW TSMEAQPSTE QSIFDSALSS LVSSPTPSNS  60
NFSGGGGDNI VIRELAGKLG NIDEIDGAPA SSGNGSCHAA PMSSPSQRPM SVTRTTTPLV  120
EFSGDSGFAE RAARFSCFGS RSFNGRTNSP FPINNNNNGT VTAIEATNGK LTRVSSTPAF  180
KALASQSPAG ESSGDCSRKR KVKSKQNSPC PKLSKEVEEK EDSDSKRRRK SEESGEKTKS  240
LDPYKDFIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII  300
NYVQSLQRQV EFLSMKLSSV NTRLDFNMEA LMSKDIFSSS NNLMHHQRVL QLESSSETLL  360
DDHLNRTLQP NPNISSNNIM GSLETSETRS FISQLPTLTH FTHSISQFST FSEDDLHGII  420
HMGFEQNHIH EPNQMWNFYY AGPSKQVPSS HMKAEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g06280

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	0.0	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187390.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A178VI12	0.0	A0A178VI12_ARATH; Uncharacterized protein
STRING	AT3G07340.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]