PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp3g05710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 144aa MW: 16136.3 Da PI: 10.1524 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.7 | 3.2e-18 | 37 | 71 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++ Tp3g05710 37 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 71 999*****************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.13E-13 | 30 | 80 | No hit | No description |
PROSITE profile | PS50114 | 12.387 | 31 | 67 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.8E-13 | 31 | 83 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.8E-15 | 35 | 71 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-16 | 37 | 71 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 37 | 62 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.61E-13 | 37 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MLDHTEKIFD PEAMESKYTS ADATEESSSS SNEKKSCAIC GTSKTPLWRG GPAGPKSLCN 60 ACGIRNRKKR RTVMGNRSDD KKKKNHTRNP KFGDSLKQRL MELGREVMLQ RSTAENQRRK 120 KLGEEEQAAV LLMALSYASS VYYA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 68 | 83 | KRRTVMGNRSDDKKKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp3g05710 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY063926 | 1e-110 | AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. | |||
GenBank | AY084525 | 1e-110 | AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence. | |||
GenBank | AY091250 | 1e-110 | AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_566290.1 | 2e-84 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 1e-85 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1J3DI50 | 6e-85 | A0A1J3DI50_NOCCA; GATA transcription factor 15 | ||||
STRING | AT3G06740.1 | 6e-84 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-81 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|