PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g04570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YA
Protein Properties Length: 258aa    MW: 27934.4 Da    PI: 10.0419
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g04570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA63.65.4e-20123171853
  CBFB_NFYA   8 aKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRg 53 
                ++Qy++I++RRq+Rak+++   ++kl++++rkpy+h+SRh hAlrRpRg
  Tp3g04570 123 SRQYHGIIRRRQSRAKAAAvldQNKLSSRCRKPYMHHSRHLHALRRPRG 171
                69****************9999**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-15114177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.953115179IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-11118140IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.5E-15124171IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-11153176IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAMHPVRESL FSAPQISLWN AFGSQSLAPA SLAGDSDSSA GVKVGSAGET EHGVNKQSNS  60
ATHLAFSLGD VKSPRVVSKP HGAAFSMQPP CLELGYTQPP IYTKYPCVEQ QYYGVVSAYG  120
SQSRQYHGII RRRQSRAKAA AVLDQNKLSS RCRKPYMHHS RHLHALRRPR GGTNAKKADG  180
TKQTQFQPQP QQSNSQNSEV LHPESGTMNL SNGLNVSGSE VTSMNYFLSS SVHPLGGIVM  240
PSKWITAAMD NGCCNFKT
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g04570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-133AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888748.11e-155nuclear transcription factor Y subunit A-2
RefseqXP_020888749.11e-155nuclear transcription factor Y subunit A-2
RefseqXP_020888750.11e-155nuclear transcription factor Y subunit A-2
SwissprotQ9M9X41e-155NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLD7L4M51e-153D7L4M5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__563__AT3G05690.11e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-133nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]