PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g04570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NF-YA | ||||||||
Protein Properties | Length: 258aa MW: 27934.4 Da PI: 10.0419 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 63.6 | 5.4e-20 | 123 | 171 | 8 | 53 |
CBFB_NFYA 8 aKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRg 53 ++Qy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRg Tp3g04570 123 SRQYHGIIRRRQSRAKAAAvldQNKLSSRCRKPYMHHSRHLHALRRPRG 171 69****************9999**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-15 | 114 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 23.953 | 115 | 179 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-11 | 118 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.5E-15 | 124 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-11 | 153 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAMHPVRESL FSAPQISLWN AFGSQSLAPA SLAGDSDSSA GVKVGSAGET EHGVNKQSNS 60 ATHLAFSLGD VKSPRVVSKP HGAAFSMQPP CLELGYTQPP IYTKYPCVEQ QYYGVVSAYG 120 SQSRQYHGII RRRQSRAKAA AVLDQNKLSS RCRKPYMHHS RHLHALRRPR GGTNAKKADG 180 TKQTQFQPQP QQSNSQNSEV LHPESGTMNL SNGLNVSGSE VTSMNYFLSS SVHPLGGIVM 240 PSKWITAAMD NGCCNFKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g04570 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352991 | 1e-133 | AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888748.1 | 1e-155 | nuclear transcription factor Y subunit A-2 | ||||
Refseq | XP_020888749.1 | 1e-155 | nuclear transcription factor Y subunit A-2 | ||||
Refseq | XP_020888750.1 | 1e-155 | nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 1e-155 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | D7L4M5 | 1e-153 | D7L4M5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__563__AT3G05690.1 | 1e-154 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-133 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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