PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g02730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 275aa    MW: 29214.5 Da    PI: 8.262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g02730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.81e-39521521100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+++++
  Tp3g02730  52 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQS 151
                7***********************9989*********************************************************************998 PP

     DUF260 100 e 100
                +
  Tp3g02730 152 Q 152
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99951153IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3952150IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MADQQRGHNT SDSRRKSAAG KRASQHTTTS SFSSGGGAMA AVTTTGTGTA SPCGACKFLR  60
RKCVSGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH IPVNRRHDAV VTISYEAQAR  120
LSDPVYGCVS TILALQQQVA SLQAELSVVQ SQVINSRVAM ANVMQQQQSH HQQQQQLVVM  180
QQPEYSNNSS ASTTLAGAAM NSFTATAAEA AAAVSYDVMA PANLEHSLQP VPRHQQRRVN  240
QHEDEEESGT DFSVPVGSTA VAAEVIFPAE GFHRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-40401541112LOB family transfactor Ramosa2.1
5ly0_B6e-40401541112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g02730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102075.11e-157PREDICTED: LOB domain-containing protein 20
RefseqXP_013746444.11e-157LOB domain-containing protein 20-like
SwissprotQ9SRV31e-152LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A291LR041e-155A0A291LR04_BRARR; Transcription factor LBD20
TrEMBLA0A398AU891e-155A0A398AU89_BRACM; Uncharacterized protein
TrEMBLM4F5T01e-155M4F5T0_BRARP; Uncharacterized protein
STRINGBra036436.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-114LOB domain-containing protein 20