PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g02290
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 694aa    MW: 78424.1 Da    PI: 6.429
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g02290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182579256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               r+ +++t++q+++Le++F+ +++p++++r+ L ++l+L+ +q+k+WFqN+R++ k
  Tp3g02290 25 RTCHRHTHQQIQRLEAYFKICPHPDESQRQTLCQELNLEADQIKFWFQNKRTQTK 79
               444578*********************************************9987 PP
2START105.11.2e-332144344206
                HHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   4 eeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                 +a +el ++   e++ Wvkss      + +e++ kf+ +         ++e +++++vv+ ++ +l e +ld+  +W++ ++    ka+t+ ++ s   
  Tp3g02290 214 ASAVEELKRLFFTEDAIWVKSSidgIYVIDQESYAKFSHAIKhfrglsAHVESSKDVTVVPIEASNLIEMFLDSE-KWKNLFPtivnKATTIHTLGSElp 312
                5677778888888999******876455677777788665558899*****************************.****9999999************* PP

                .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHH CS
      START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwll 181
                     ++lq++   l  lsplvp R+f++vR+++q  +g w+++dvS +  ++ + ++s+ +   +pSg+li++++n h++vtw+ehv+++ +   h ++
  Tp3g02290 313 vnensNVLQVIWERLHILSPLVPsREFMIVRCCQQIDEGLWIVADVSYNIVNFDQINPSCYK---RPSGCLIRTLPNAHTEVTWIEHVEVDHKPDtHRMY 409
                ***********************************************999999998888887...*************************998768**** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                + l+  g   gak+w  tl+r ce+
  Tp3g02290 410 KDLLWGGSGYGAKRWIVTLERMCER 434
                ***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-181075IPR009057Homeodomain-like
SuperFamilySSF466892.27E-171381IPR009057Homeodomain-like
PROSITE profilePS5007116.0182181IPR001356Homeobox domain
SMARTSM003898.1E-152185IPR001356Homeobox domain
CDDcd000866.35E-152281No hitNo description
PfamPF000464.5E-162679IPR001356Homeobox domain
PROSITE profilePS5084837.59202437IPR002913START domain
SuperFamilySSF559611.51E-24205435No hitNo description
CDDcd088754.98E-86208433No hitNo description
SMARTSM002341.0E-20211434IPR002913START domain
PfamPF018521.2E-26214434IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-6255398IPR023393START-like domain
SuperFamilySSF559611.51E-11457659No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MDHDGNGNQG NEQHASVNGR KREKRTCHRH THQQIQRLEA YFKICPHPDE SQRQTLCQEL  60
NLEADQIKFW FQNKRTQTKA QDERNSNILL RGENEKIQCE NEAMFEALKN VTCPPCGGPS  120
FGRDERERNL EKLRAENALL REKRDKIANF VSKNKHRQIM VDSFASVQRQ QIFDTQTSNH  180
LLEPSSSSGS PTSQIIQPQL LSEMNIRQLS ETAASAVEEL KRLFFTEDAI WVKSSIDGIY  240
VIDQESYAKF SHAIKHFRGL SAHVESSKDV TVVPIEASNL IEMFLDSEKW KNLFPTIVNK  300
ATTIHTLGSE LPVNENSNVL QVIWERLHIL SPLVPSREFM IVRCCQQIDE GLWIVADVSY  360
NIVNFDQINP SCYKRPSGCL IRTLPNAHTE VTWIEHVEVD HKPDTHRMYK DLLWGGSGYG  420
AKRWIVTLER MCERMALSSL PTIPATDWSE AIATVEGRRS VMKLAERMLK HFNEMLTMSG  480
KVDFPQQSKC GVRISIRMNN EAGQPSGLVV SAASCLSVPA SPLQVFNCLR NKDTRHQWDV  540
LCYGNVVSEI ASVFTGANEN NCINLLRPTE PEGNEMTQEL HKNMSMLQDC YMDALGGMIV  600
YAPLDMAIMN LAASGEVDPS NIPILPSGFT ISSDGRRSME AEDGGTLLTV AFQILISGQN  660
NRPREVNEKS VDTVTSLISS TVQRIKLFLN CPFD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g02290
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408322.10.0homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLV4LGW80.0V4LGW8_EUTSA; Uncharacterized protein
STRINGXP_006408322.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8