PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g01580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 264aa    MW: 28092.1 Da    PI: 8.268
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g01580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.89.7e-304107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e++
  Tp3g01580   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQAAVEAV 103
                6************************************************************************************************998 PP

     DUF260  96 llke 99 
                + +e
  Tp3g01580 104 MKGE 107
                8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3693109IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EIATDAATDG  120
QSPPLKMYDI RHNSKSENSA AAAAAATGST GLKRAKTRRA KRVAAAAKPA ESAGGEASHE  180
SSLSHQSEIV AAHEGESKES ESNISEVMTF SPPAVQGSGE IKLDLTLGLE PVSCAYHVVP  240
VKKRKIGVFG TCQEESPCKT ELRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g01580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088770.0AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408407.11e-173LOB domain-containing protein 41
SwissprotQ9M8861e-167LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4LH471e-172V4LH47_EUTSA; Uncharacterized protein
STRINGXP_006408407.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-146LOB domain-containing protein 41