PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g01220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 324aa    MW: 36174.1 Da    PI: 7.3058
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g01220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.31e-32742012115
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk++eWLl +ak++i+el+ ++ s+++++  +++s  + ++   +            
  Tp3g01220  74 FGGKDRHSKVYTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVEWLLDAAKEEIDELPPLPVSPETFSlFNHQSFLNLGQRPGQdptqlgfkingc 173
                689*************************************************************777775555333333333322222355566666666 PP

        TCP  89 ..kaaksaakskksqksaasalnlakesr 115
                  + ++++  +++++++ ++  ++a++++
  Tp3g01220 174 veE-STTSSRKENNNERVEKDVAFANNHH 201
                541.2222222222222222233333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-2976187IPR005333Transcription factor, TCP
PROSITE profilePS5136930.96676134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNTVPWKDEN DDVSGRTRTR REGEVEEDAE EAVVVTVATS GKTVITKPLT SVSSSSSSWM  60
KSKDPRIVRV SRAFGGKDRH SKVYTLRGLR DRRVRLSVPT AIQLYDLQER LGVDQPSKAV  120
EWLLDAAKEE IDELPPLPVS PETFSLFNHQ SFLNLGQRPG QDPTQLGFKI NGCVEESTTS  180
SRKENNNERV EKDVAFANNH HIGSYGTYHN TEHHHQQHSS FQTDYHHHQH QLHSLVPFPS  240
QFLVCPMTTS SSTTTIQSLF PSSSSAGMGT METTDPRQMV SHFQMPLMGS SSSSASQNIS  300
TLYSLLHGGS SNRMSSVQFN RTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2181135155Putative transcription factor PCF6
5zkt_B6e-2181135155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g01220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638773.11e-172PREDICTED: transcription factor TCP13 isoform X1
SwissprotQ9S7W51e-172TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A178VKM01e-170A0A178VKM0_ARATH; TFPD
STRINGAT3G02150.21e-171(Arabidopsis thaliana)
STRINGBo5g152840.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-159plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]