PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g00980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 401aa    MW: 45295.7 Da    PI: 8.0415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g00980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-1858105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
        Tp3g00980  58 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 105
                      79********************************************97 PP

2Myb_DNA-binding54.33.2e-17111156148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
        Tp3g00980 111 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 156
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2649108IPR009057Homeodomain-like
PROSITE profilePS5129418.62953105IPR017930Myb domain
SuperFamilySSF466896.74E-3155152IPR009057Homeodomain-like
SMARTSM007171.7E-1457107IPR001005SANT/Myb domain
PfamPF002498.4E-1758105IPR001005SANT/Myb domain
CDDcd001672.88E-1160105No hitNo description
PROSITE profilePS5129426.753106160IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26109161IPR009057Homeodomain-like
SMARTSM007172.6E-17110158IPR001005SANT/Myb domain
PfamPF002491.8E-16111156IPR001005SANT/Myb domain
CDDcd001671.57E-11113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MPIHVRDREK GRLQNLNRDI FCCVSASINQ TQAKRAAFPN LWNIMGRSPC CDKAGLKKGP  60
WTPEEDQKLL AYIEEHGHGS WRSLPEKAGL QRCGKSCRLR WTNYLRPDIK RGKFTVQEEQ  120
TIIQLHALLG NRWSAIATHL PKRTDNEIKN YWNTHLKKRL VKMGIDPVTH KHKNETLLSS  180
TGQSKNAATL SHMAQWESAR LEAEARLARE SKLLHLQHYQ NNNSNNNLNK SAPNHCLTHK  240
TSTNWTKPNE GNGDQQLESP TSTVTFSENL PLMIMPLGIP TENRNRNIRE SNNESSSEIP  300
NIIEFAVSSS TSSDVTLVKD SEHDWMRQIN CPAEGIEEGF TSLLLGDSID RSLSTGKNDE  360
ATTGAVAVNG SDYSYYEDNK NYWNSILNLV DSTPSDSPTM F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26561605108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g00980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493090.0AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_186763.20.0myb domain protein 106
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLD7LAI80.0D7LAI8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__117__AT3G01140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.10.0myb domain protein 106