PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g00980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 45295.7 Da PI: 8.0415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 58 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Tp3g00980 58 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 105 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 111 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Tp3g00980 111 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 156 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 49 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.629 | 53 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-31 | 55 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 57 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-17 | 58 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-11 | 60 | 105 | No hit | No description |
PROSITE profile | PS51294 | 26.753 | 106 | 160 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 109 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-17 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 111 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 113 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MPIHVRDREK GRLQNLNRDI FCCVSASINQ TQAKRAAFPN LWNIMGRSPC CDKAGLKKGP 60 WTPEEDQKLL AYIEEHGHGS WRSLPEKAGL QRCGKSCRLR WTNYLRPDIK RGKFTVQEEQ 120 TIIQLHALLG NRWSAIATHL PKRTDNEIKN YWNTHLKKRL VKMGIDPVTH KHKNETLLSS 180 TGQSKNAATL SHMAQWESAR LEAEARLARE SKLLHLQHYQ NNNSNNNLNK SAPNHCLTHK 240 TSTNWTKPNE GNGDQQLESP TSTVTFSENL PLMIMPLGIP TENRNRNIRE SNNESSSEIP 300 NIIEFAVSSS TSSDVTLVKD SEHDWMRQIN CPAEGIEEGF TSLLLGDSID RSLSTGKNDE 360 ATTGAVAVNG SDYSYYEDNK NYWNSILNLV DSTPSDSPTM F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 56 | 160 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g00980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF249309 | 0.0 | AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_186763.2 | 0.0 | myb domain protein 106 | ||||
Swissprot | Q9LE63 | 0.0 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | D7LAI8 | 0.0 | D7LAI8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__117__AT3G01140.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 0.0 | myb domain protein 106 |