PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g00840
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 566aa    MW: 61247.5 Da    PI: 8.8532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g00840genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30222281159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+
  Tp3g00840 222 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 281
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31208283IPR003657WRKY domain
SuperFamilySSF1182902.62E-27216283IPR003657WRKY domain
PROSITE profilePS5081128.828217283IPR003657WRKY domain
SMARTSM007747.6E-37222282IPR003657WRKY domain
PfamPF031061.8E-26223281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MEVLAKLTTT SDSIVKDELV GSVASCLGDG RRIQESRKLC HELESAKVEM SEMKEENEKL  60
KVMLEHIESD YKSLRLRFLN KSQQKSSAKP VRDNKNDHLN AEYLSSSDQE REFVSLSLGR  120
RNSNSPSNSI GNKDEKKKII SLGAKEDEEL TNAGLTLGSN VGLEKDNRII SNQEDSSQEA  180
PAMNKVTVKR SSPTGDADDN GQQNLAKRAR VCVRARCDSL TMNDGCQWRK YGQKVAKGNP  240
CPRAYYRCTV APGCPVRRQV QRCVDDMSIL ITTYEGTHNH PLPLSATAMA SATAAAASML  300
LSGSSTSNST TSGLDTDMIK NGMNFKLYDN HSRFINKPFY SPSTVLSPIH PTVTLDLTAP  360
PTPQPSSSPY SLNFNNFSSL QRFPSTNLSF SSSSSSSSSD STSTINIPAI WGSGYASYSP  420
VTCNKVQTGS SSFLNLGNTL PKNSTLTESL TKALTSDPSF HSVIAAAIST MVGSGNGDHQ  480
SACTGKKNLM LKTSTSNSLS TNQQTADANN KKKGCEGYFS SLLMSNMANP GILSPLNLPS  540
SQLPFTMFTT SSSSTSSFVN KQEKKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21209283174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g00840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437679.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG81e-169WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A078GUB20.0A0A078GUB2_BRANA; BnaCnng05780D protein
STRINGBra040505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-135WRKY DNA-binding protein 72