PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g00450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 39844 Da PI: 6.1899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.1 | 1.3e-30 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgyWka 85 lp+G++F+Ptde+++ e+L++k+ +e++ ++v+i++++P++Lp ++++ +++fF+k+ ++y tg+rk+r+ + +W++ Tp3g00450 55 LPKGVKFEPTDEDII-EFLEAKCGIGAsephllIEEFIwpLTEDVGINYTHPENLP-GANKDGVNVFFFHKTVQAYGTGQRKRRKitptcpnEEPVRWHK 152 799************.9*****98777556655333335347889***********.445666799******************7566555544788*** PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 tg++k+vl +g + g+kk++v+yk + +k+ek++Wv+h+y+l Tp3g00450 153 TGRTKPVLL-NGVQRGCKKIMVLYKSarKGSKPEKSNWVLHQYHL 196 *********.99************5433666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-36 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.977 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-13 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MASAWIVDGR GIATKVKNAS VSSALQIKDC GASIQCPNCS YRIDNSNVLI PWPGLPKGVK 60 FEPTDEDIIE FLEAKCGIGA SEPHLLIEEF IWPLTEDVGI NYTHPENLPG ANKDGVNVFF 120 FHKTVQAYGT GQRKRRKITP TCPNEEPVRW HKTGRTKPVL LNGVQRGCKK IMVLYKSARK 180 GSKPEKSNWV LHQYHLGTEG KEVGDYVVSK ITYQQQKLGD EGESSGVRGG PRTPKTNTPT 240 APRAVDGVAG DEEAFDDDKM FDPFAEGLDS IPEAALGKMW SKKARVEEDS VVNLSEDTLT 300 CNESIEASSL WENQVLPNPT VGTFAELDGF ALSDLENADL GTPPDFLTVR SKMKRNKKNS 360 LH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g00450 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 1e-130 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-130 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888155.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 2e-71 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | Q9SS95 | 0.0 | Q9SS95_ARATH; F4P13.14 protein | ||||
STRING | Bostr.1460s0050.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |