PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29660
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 133aa    MW: 14541.4 Da    PI: 8.6322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29660genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.4e-1279129155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +++kGVr ++ +g W AeI+ p     +  +r  lg+f t e+A +a+++a+ +l g
  Tp2g29660  79 KKHKGVRKKP-SGNWSAEIWIP-----SakARRGLGTFPTYEMAVQAYEEAAAELVG 129
                589****999.7*********9.....345999*******************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-1979132No hitNo description
SMARTSM003801.2E-980133IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1180131IPR016177DNA-binding domain
PROSITE profilePS5103216.08180133IPR001471AP2/ERF domain
PfamPF008471.0E-680129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1580131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDNSENVRSS VRNENFTSVS QPSYLTRDQE NEIIVSALRQ VISSPGALPP SDAGPCPLCG  60
VTGCYGCAFP RPVEIKKEKK HKGVRKKPSG NWSAEIWIPS AKARRGLGTF PTYEMAVQAY  120
EEAAAELVGR RSE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103814.15e-76PREDICTED: putative ethylene-responsive transcription factor ERF121
RefseqXP_013650740.26e-76putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q402e-56EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A397YK601e-74A0A397YK60_BRACM; Uncharacterized protein
TrEMBLM4D6L41e-74M4D6L4_BRARP; Uncharacterized protein
STRINGBra012123.1-P2e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.15e-49ERF family protein