PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 336aa    MW: 38144.5 Da    PI: 8.1231
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-1783132155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp2g29490  83 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 132
                78*******************......55**********************99987 PP
2AP240.85.5e-13175225155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A++  +     + k+++lg f+ + eAa+a+++a+ k +g
  Tp2g29490 175 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDIEMEAARAYDKAAIKCNG 225
                89********.7******5553....234**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-1683141IPR016177DNA-binding domain
PfamPF008471.8E-883132IPR001471AP2/ERF domain
SMARTSM003808.4E-3184146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1784140IPR001471AP2/ERF domain
PROSITE profilePS5103217.95284140IPR001471AP2/ERF domain
CDDcd000181.22E-23175234No hitNo description
SuperFamilySSF541711.18E-16175234IPR016177DNA-binding domain
PfamPF008479.3E-9175225IPR001471AP2/ERF domain
SMARTSM003808.8E-30176239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-16176234IPR001471AP2/ERF domain
PROSITE profilePS5103215.251176233IPR001471AP2/ERF domain
PRINTSPR003673.4E-6177188IPR001471AP2/ERF domain
PRINTSPR003673.4E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MWNLNDSPDH HEKSDVSISM SSSATWLLSV PPVTRNFFPS QSMEQEVRGF TISQRVVGSD  60
PSGSPEISPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA  120
RAYDRAAVKF RGVDADINFE IEDYVEDLEQ MNNLTKEEFM HVLRRQSTGF PRGSSKYRGV  180
TLHKCGRWEA RLGQFLNKKY VYLGLFDIEM EAARAYDKAA IKCNGKDAVT NFDHKVYEEE  240
LIVPEKKWND HNLDLSLGES NSEEFGIKSE IVSMRNRIRD EERPLGSDLS LAMTTTATVR  300
SEKQSDGGGK AASSGFSPHN SPWNHHTPPN FHFSRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29490
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393916.20.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-169TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A078FIK10.0A0A078FIK1_BRANA; BnaC07g16190D protein
TrEMBLA0A0D3D8830.0A0A0D3D883_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E0780.0A0A3P6E078_BRAOL; Uncharacterized protein
STRINGBostr.0568s0140.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-164target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]