PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g28730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 40931.7 Da PI: 4.5492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.3e-12 | 193 | 236 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L Tp2g28730 193 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 236 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.643 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-16 | 190 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-10 | 193 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.16E-5 | 194 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 194 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MELSTQMNVF EELLVPTKQE TTDNNNNYNY NSNINNLSFN GGFDHHHHHQ LFPNGWNIDY 60 LCFNNEEEDE NTLLYSSSFM DLISQPAPLL LHQTPPLPPP SSSSPPLISS SAATFDYPFL 120 EALQEIIDSS SSSPPLMLPT SQEESFIHPT SYDPSPLMES DQSKSFSVGY CGGGETTNKK 180 KNKKLEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDAI DYMKELLDKI 240 NKLQDEEQEL GVTNSSHHSK LFGDLKDLNT NEPLVRNSPK FEVDQRDEDT RVDICCSPKP 300 GLLLSTVSTL ETLGLEIEQC VISCFSDFSL QASCSEVAEQ RDFITSEDIK QALFRNAGYG 360 GNCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 200 | KKKNKKLEGQPSKNLMAERRRRK |
2 | 195 | 202 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g28730 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085134 | 0.0 | AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150653.1 | 0.0 | PREDICTED: transcription factor bHLH93 | ||||
Refseq | XP_013643226.1 | 0.0 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 0.0 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3P5YIV8 | 0.0 | A0A3P5YIV8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E6K0 | 0.0 | M4E6K0_BRARP; Uncharacterized protein | ||||
STRING | Bra024404.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-171 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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