PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g28610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 491aa    MW: 54669.3 Da    PI: 6.5943
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g28610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14227286155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Tp2g28610 227 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 286
                57*******************666664478446**********99*************98 PP
2AP250.26.2e-16329380155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Tp2g28610 329 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 380
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-16227295IPR016177DNA-binding domain
PfamPF008472.0E-11227286IPR001471AP2/ERF domain
CDDcd000184.37E-22227296No hitNo description
PROSITE profilePS5103218.742228294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-15228294IPR001471AP2/ERF domain
SMARTSM003802.3E-27228300IPR001471AP2/ERF domain
PRINTSPR003673.2E-6229240IPR001471AP2/ERF domain
PfamPF008472.7E-10329380IPR001471AP2/ERF domain
CDDcd000185.63E-12329388No hitNo description
SuperFamilySSF541717.19E-18329389IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-18330388IPR001471AP2/ERF domain
SMARTSM003807.3E-31330394IPR001471AP2/ERF domain
PROSITE profilePS5103219.177330388IPR001471AP2/ERF domain
PRINTSPR003673.2E-6370390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEILKSPDQS HFVSYDASST PYLIDNFYVL KEEAQLEAAT MADSTTLATF FDSQTHSPVH  60
ILKLEDFLGD SSTSFARYSD NQTETQDSSS LSQIYDPRHH NVVTGFFSDH HHDLKTIACF  120
QTNSGSEIVD DSTSLGRANL TSGSEFLSVH AVESSKSAEL GIHGGCTKGG ALSLAVDNID  180
RPSSCNNGER GKNNKKTTVS KKETATEVES SDDSKKKIAE TFGQRTSIYR GVTRHRWTGR  240
YEAHLWDNSC RREGQARKGR QVYLGGYDKE DKAARAYDLA ALKYWGPTAT TNFQIASYSK  300
ELEEMNHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT  360
FATEEEAAEA YDIAAIKFRG LNAVTNFEMN RYDVEAVMKS SFPVGGGAAK RHKLSLESPP  420
PPSDDHNLQQ DLLPSSSSDQ NPNSIPCGIP FESSVLYHHQ SFFQHYPALS DPTVQVPMNQ  480
AEFFLWPNQS Y
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g28610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007164.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLE4MY070.0E4MY07_EUTHA; mRNA, clone: RTFL01-30-G24
STRINGXP_006394021.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]