PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g28430

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 271aa MW: 31298.5 Da PI: 9.9899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g28430	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.1e-13	85	134	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++++ ++ L++++P + +s++ + a+iLe ++ Y+k+ Tp2g28430 85 QRMNHIAVERNRRSQMKHFISILKSMMPLS---YSQRSDQASILEGTISYLKK 134 79**************************...****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.57E-12	82	140	No hit	No description
SuperFamily	SSF47459	3.79E-16	83	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.754	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-12	85	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-11	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-10	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	4.98E-8	193	264	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.5E-6	194	259	No hit	No description
PROSITE profile	PS51671	9.621	197	271	IPR002912	ACT domain
CDD	cd04873	5.18E-4	198	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MVFQEEYPYG YEILDYFEKI IGSPLNLFAS SSSATLSCTT AEQQSHSTEK LSSLQARGGS 60 GEEPPRKRRR RRTRSEQKKE EKENQRMNHI AVERNRRSQM KHFISILKSM MPLSYSQRSD 120 QASILEGTIS YLKKQEQLLQ SLESQSKTTK PNQSSNIFSD FFIFPQYSTA TASSHHRRDR 180 LPVVADVEVT LVERHVNIKV LTKTRPRLLF KIINEFYSLG LSILHLNLTT HNNMSLFTFS 240 VKVEEDCQLT TTVNEVAKAV HEVVRKIHKE N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	69	RKRRR
2	65	71	RKRRRRR
3	65	72	RKRRRRRT
4	66	71	KRRRRR
5	67	72	RRRRRT
6	85	96	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g28430

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070095	4e-79	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	4e-79	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613626.1	1e-129	PREDICTED: transcription factor bHLH99
Refseq	XP_013675453.1	1e-129	transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-110	BH099_ARATH; Transcription factor bHLH99
TrEMBL	A0A0D2ZQ38	1e-127	A0A0D2ZQ38_BRAOL; Uncharacterized protein
STRING	Bo00615s100.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-91	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]