PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g28330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 315aa    MW: 35511.2 Da    PI: 6.1799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g28330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+ +++++G  +W++ ++  g++R++k+c++rw +yl
        Tp2g28330 14 KGPWLPEEDEKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.91e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
        Tp2g28330  67 RGKFSPEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.071961IPR017930Myb domain
SuperFamilySSF466893.37E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-251568IPR009057Homeodomain-like
CDDcd001672.59E-111661No hitNo description
PROSITE profilePS5129427.44262116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002498.8E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2869117IPR009057Homeodomain-like
CDDcd001671.07E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRSPGADET GLKKGPWLPE EDEKLISYIH KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEETILN LHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DDIFSSLSQL MSLPNLRGFL DLQQLVPFED QALLNLQAEM AKLQLFHYFL  180
QPPPLPMSSS SVNPNELNVL NLLIKENSNT NSLDLCFLTS CLQDINNNLP SLKALDENHL  240
ISQNNSPIWL HEPPSLNQTM LPSHDLSTWS DDLARSVDGF GCNQASSSHD QPVAATGSVD  300
LPDHLFDDSI FPYQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g28330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394061.11e-180transcription factor MYB53
SwissprotQ9FJP21e-164MYB53_ARATH; Transcription factor MYB53
TrEMBLV4KN311e-179V4KN31_EUTSA; Uncharacterized protein
STRINGXP_006394061.11e-179(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-161myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]