PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g27280
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CAMTA
Protein Properties Length: 1063aa    MW: 118753 Da    PI: 6.0927
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g27280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.82.2e-58191362118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e ++rwl++ ei++iL n++k+ +++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fqrrcyw
  Tp2g27280  19 LSEaQHRWLRPAEICEILRNHQKFLIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRCYW 118
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                +Le++l +iv+vhylevk
  Tp2g27280 119 MLEQDLMHIVFVHYLEVK 136
                ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.18815141IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-8618136IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-5121135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.48E-14467553IPR014756Immunoglobulin E-set
PROSITE profilePS5029720.049650761IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-19650761IPR020683Ankyrin repeat-containing domain
PfamPF127968.5E-8651726IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-18655794IPR020683Ankyrin repeat-containing domain
CDDcd002047.15E-16656759No hitNo description
SMARTSM002481500667696IPR002110Ankyrin repeat
PROSITE profilePS500889.351667699IPR002110Ankyrin repeat
PROSITE profilePS5008811.007700732IPR002110Ankyrin repeat
SMARTSM002480.0043700729IPR002110Ankyrin repeat
SMARTSM000150.32875897IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.9E-8876925IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858877905IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021877896IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092898920IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413899923IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4901920IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIEQLLS EAQHRWLRPA EICEILRNHQ KFLIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM SSSGIKETNS NSLSGTASVN IDSTATPSST LSPLCEDADS  180
GDSRQASSSL QANPERQTVA PQTRHQQNAS PINSYNPTSI LGNQDGWTSA PGIGIVSQVH  240
ENRVKESDSQ RSLDVPAWDA SFDNSLARYQ NLPYNALLNQ TQTSHAGLIP MEGNKGSPLT  300
AEHLRNPLQN QVNWQIPVQD SLPLKKWPIN LHSGMSDGTD PALLGQRAHE NFGTFSSLLG  360
CQQQPIGGSF QAPFTSIEAA YIPKLGPENL LYEASANQTL PLRKSLLKKE DSLKKVDSFS  420
RWVSNELGEM EDLQMQFSSG GIAWTSVETA AAASSLSPSL SEDQRFTIID FWPKWTQTDS  480
EVEVMVVGIF LLSPQEVTNY SWSCMFGEVE VPAEILVDGV LCCHAPPHEV GQVPFYITCS  540
DRFSCSEVRE FDFLPGSTKK LNTAEIYGAF TNEASLHLRF ENLLARISSA QEHHIFEDIG  600
EKRRKISRIM LLKDEKESLL PGTIEKDLTE LETKERLIRE EFEDKLYLWL IHKVTEEGKG  660
PNILDEEGQG VLHLAAALGY DWAIKPILAA GVSINFRDAN GWSALHWAAF SGREDTVAVL  720
VSLGADSGAV TDPSPELPLG KTAADLAYGN GHRGISGFLA ESSLTSYLEK LTVDAKEHSS  780
AESSRAKAVQ TVAERTATPM GYGDVPETLS MKDSLTAVFN ATQAADRLHQ VFRMQSFQRK  840
QLSEFGDNNE FDISDELAVS FAAGKTKKPG HSGGAVHAAA VQIQKKYRGW KKRKEFLLIR  900
QRIVKIQAHV RGHQVRKQYR TIIWSVGLLE KIILRWRRKG SGLRGFKRDT VTKAPEPVCA  960
PAQEDDYDFL KEGRKQTEER LQKALTRVKS MAQYPEARAQ YRRLLTVVEG IRENEASSSS  1020
AMNNNNNNNN SNTEEAANYN EEDDLIDIDS LLDDDTFMSL AFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g27280
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938110.0AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394184.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1J3C8U50.0A0A1J3C8U5_NOCCA; Calmodulin-binding transcription activator 2
TrEMBLA0A1J3JZU70.0A0A1J3JZU7_NOCCA; Calmodulin-binding transcription activator 2
STRINGXP_006394184.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]