PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g27130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 348aa    MW: 38904.7 Da    PI: 4.782
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g27130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.73.5e-4761341129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g r++r+t+sgyWk+tgkd++v   ++e
  Tp2g27130   6 LAPGFRFHPTDVELVRHYLKRKVLGKKFLT-NAIAEIDIYKFEPPDLPdKsCLRTGDLKWYFFCPRLKKYPNGARAKRSTESGYWKTTGKDRDVSY-NDE 103
                579************************888.88**************96347788999*************************************9.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                +vg  +tL+f+ gr+p+g +tdWvmheyrle
  Tp2g27130 104 VVGKIRTLIFHYGRTPRGDRTDWVMHEYRLE 134
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-573156IPR003441NAC domain
PROSITE profilePS5100554.4716156IPR003441NAC domain
PfamPF023654.0E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGKTNLAPGF RFHPTDVELV RHYLKRKVLG KKFLTNAIAE IDIYKFEPPD LPDKSCLRTG  60
DLKWYFFCPR LKKYPNGARA KRSTESGYWK TTGKDRDVSY NDEVVGKIRT LIFHYGRTPR  120
GDRTDWVMHE YRLEDKALAQ KNVPQDTYVL CKLFKKNGLG PRHGSEYGAP FKEEDWSDEE  180
EVDTENSVAI PSAENADPGP SKETSLVATA SHLHAPRDCF AGVYSESCVS DIPQLTATVL  240
PPLTSNAVAH TPMSSSPLLG VPLAPPDDDE FFSMLDLFVV DKDESLLFDG FHNQYEVRPE  300
PEVPVVKEAP VCLEDGDLSG VPDSSHELFI ELQDLIEPST SPAAQADL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-46115712166NO APICAL MERISTEM PROTEIN
1ut4_B6e-46115712166NO APICAL MERISTEM PROTEIN
1ut7_A6e-46115712166NO APICAL MERISTEM PROTEIN
1ut7_B6e-46115712166NO APICAL MERISTEM PROTEIN
4dul_A6e-46115712166NAC domain-containing protein 19
4dul_B6e-46115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g27130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394207.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-130NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4KVV10.0V4KVV1_EUTSA; Uncharacterized protein
STRINGXP_006394207.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-164NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]