PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g25180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 861aa MW: 96100.6 Da PI: 6.7966 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v Tp2g25180 164 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRV 260 99*****************************7333.34459************************************************..449999*** PP EEE-S CS B3 95 kvfrk 99 +v+r+ Tp2g25180 261 GVRRA 265 **996 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 290 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk Tp2g25180 290 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 372 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-40 | 160 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-40 | 161 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-20 | 162 | 264 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 164 | 265 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.8E-37 | 290 | 372 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.9E-10 | 725 | 820 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.17E-12 | 734 | 812 | No hit | No description |
PROSITE profile | PS51745 | 24.555 | 735 | 817 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MASSEVSMKG NRGGENFSSA GYSDPKETRN ISVAGEGQKT HSNRSVAVER VVDPEAALYR 60 ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE QQMPLYDLPS KLLCRVINVD 120 LKAEADTDEV YAQITLLPEP NQDENAIEKE APPPPPLRFQ VHSFCKTLTA SDTSTHGGFS 180 VLRRHADECL PPLDMSRQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK 240 RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF 300 TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEDSDP 360 TRWAKSKWRS LKVRWDETSS IPRPDRVSPW KIEPALAPPA LSPLPMPRPK RPRSNMAPSS 420 PDSSMLIREG SSKANMDPLP ASGLSRVLQG QEYPTLRTKH TESVECDAPE NSVVWQSSAD 480 DDKVDVVSAS RRYENWMSSG RHEPTYTDLL SGFGANIDPS HGHQIPFYDH SSSPSVAAKK 540 ILSDQDGKFD YLANQWQMMH SGLSLKLHES PRIPAASDAC FQGRGNAKYG EYPVFHALTT 600 ETAGGNWPIR PRALNYFEEV VHAQVQAQAQ AQAREHVTKR PAVVPEETVK SRDGNCRLFG 660 IPLVNNVNGT DSTMSQRNNL NEITGLTQIA SPKVQDLSDQ SKGSKSANDH REQGRPFQAN 720 HPHPKDIHTK TNSSRSCTKV HKQGIALGRS VDLSKFQNYE ELIAELDRLF EFNGELSAPK 780 KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR KIYIYTKEEV RKMNPGTLSC RSEEEAVIGE 840 GSDAKDAKSA SNPSLSSAGN S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-180 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-180 | 57 | 394 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g25180 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979461 | 0.0 | JN979461.1 Brassica rapa subsp. pekinensis auxin response factor 2-3 (ARF2-3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394444.1 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A1J3EGZ4 | 0.0 | A0A1J3EGZ4_NOCCA; Auxin response factor | ||||
STRING | XP_006394444.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |