PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g25080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 236aa    MW: 26264.3 Da    PI: 6.307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g25080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-2076125255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  Tp2g25080  76 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 125
                8********.**********93....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3375134IPR001471AP2/ERF domain
CDDcd000185.78E-3475134No hitNo description
SuperFamilySSF541713.27E-2276134IPR016177DNA-binding domain
PfamPF008473.6E-1476125IPR001471AP2/ERF domain
PROSITE profilePS5103224.80376133IPR001471AP2/ERF domain
SMARTSM003806.5E-3876139IPR001471AP2/ERF domain
PRINTSPR003671.2E-117788IPR001471AP2/ERF domain
PRINTSPR003671.2E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MPFGGDEPEE KEDENLFPVY SSRSQHDMRV MVSALTQVIG NQQSNSHDSP SVYNPQDPSQ  60
QVASTHQDQG NLRRKHYRGV RQRPWGKWAA EIRDPQKAAR VWLGTFETAE SAALAYDEAA  120
LKFKGSKAKL NFPERVNVTN NQLSNSTYYS SNQTEPQNIP YYNQHYQDDM LSFNLGGGGY  180
GSGSGFSISH DHSLSTTTTA ATTSSSSGGS SRQQEEQDYA RFWRFGDSSS SPHSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2875136163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2775137467ATERF1
3gcc_A1e-2775137467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g25080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608621e-91AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313571e-91BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437444.11e-126PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-109EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A3P6E7121e-119A0A3P6E712_BRAOL; Uncharacterized protein
STRINGBo2g161710.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]