PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 257aa    MW: 28599.3 Da    PI: 7.6656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-2099149255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIr p   + k  r++lg+++ta eAa+a+++a+ +l+g
  Tp2g24810  99 HYRGVRRRP-WGKYAAEIRNP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 149
                8********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-3298158IPR001471AP2/ERF domain
CDDcd000185.66E-3198157No hitNo description
SMARTSM003803.2E-3699163IPR001471AP2/ERF domain
PROSITE profilePS5103224.72499157IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2399158IPR016177DNA-binding domain
PfamPF008473.5E-1499149IPR001471AP2/ERF domain
PRINTSPR003671.6E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.6E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATKQEVSAI EFISQHLLTD FASMETKVYN FSLNEADPSL FTSQVHDFHS VTSPRTINNQ  60
TPKPKSTINR RKPPLPNLSV PKTVSGMMKK TEEEEEEKHY RGVRRRPWGK YAAEIRNPNK  120
KGSRIWLGTY DTAVEAARAY DQAAFQLRGR KAILNFPLDA RATSESCFKE GVVGLGKRKR  180
VKNSPPMEEE KAVAVRVKVE EEESEATETT EAEAEVEAVP LTPSSWMGVW DVGAGDGIFS  240
VPPLSPTSPN FSVISVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-27961571172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g24810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394488.11e-146ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-125EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN71e-145V4KKN7_EUTSA; Uncharacterized protein
STRINGXP_006394488.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-117ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]