PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g24800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22584.2 Da PI: 5.4357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.5e-17 | 106 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f + +Aa+a++ a+ kl+g Tp2g24800 106 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 156 7********.**********954..34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 105 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 106 | 165 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.605 | 106 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-12 | 106 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.38E-19 | 106 | 164 | No hit | No description |
SMART | SM00380 | 9.6E-35 | 106 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 146 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1904277 | Biological Process | negative regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MATFEESSGL EVIQKHLFED LMIPDGFMED FVFDDAAFVS GLWSLEPLNA VPKLEPTSPA 60 LDPDSYVREF PQMEGESSSS STTTTSLEVE IVSNRKRPKS FEETRHYRGV RRRPWGKFAA 120 EIRDPAKKGS RIWLGTFESD IDAARAYDYA AFKLRGRKAV LNFPLDAGKY DAPVNSCRKR 180 RRSDVIEPQG TTTSNSSSSS N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 103 | 165 | 2 | 64 | ATERF1 |
3gcc_A | 2e-28 | 103 | 165 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 181 | RKRRR |
2 | 177 | 182 | RKRRRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g24800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352923 | 0.0 | AK352923.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136497.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor ERF107 | ||||
Swissprot | Q9FKG2 | 1e-107 | EF107_ARATH; Ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | A0A398A9W0 | 1e-112 | A0A398A9W0_BRACM; Uncharacterized protein | ||||
STRING | Bra012939.1-P | 1e-112 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3229 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61590.1 | 1e-105 | ERF family protein |