PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g24280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TCP | ||||||||
Protein Properties | Length: 360aa MW: 40191 Da PI: 6.9108 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.6 | 1.9e-29 | 63 | 167 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+ ak +++l+ + Tp2g24280 63 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVAKDDVDKLPPLqfphgfnqmypnlvfgnpgigessstsafpnlgfles 162 78*************************************************************6766666666666666666655443333333333333 PP TCP 66 ....s 66 + Tp2g24280 163 wdlgG 167 33331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.316 | 64 | 122 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.1E-27 | 64 | 138 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MRSRECDEEE IQAKQEGDHN HNHQVNLNNM LQQQNQPSLV SSSRQWASAF RNPRIVRVSR 60 TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLEVAKDDVD 120 KLPPLQFPHG FNQMYPNLVF GNPGIGESSS TSAFPNLGFL ESWDLGGSSS RTRSRITDTS 180 TTRRESFDLD KGKWIKHDEN SNLQDHGLET NHQHFSLNNP YNNNNTSSYY NLGHLQQSLD 240 QSGTNNVTVA ISNVPTNNNN NLNLPPPPSS SAGDGSQLFF GPPPPAMSSL FPTYPSFLGA 300 SHHHHVVDRA GNLQLFSSNA NTASQQQMMT GNSSLIRPFH HLMSSNHDTD LHSSDNDSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-19 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-19 | 69 | 123 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g24280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280693.1 | 0.0 | transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 0.0 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 0.0 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280693.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-161 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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