PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g24120

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 378aa MW: 42360.8 Da PI: 6.7292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g24120	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.2	1.2e-17	152	201	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Tp2g24120 152 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 201 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.9E-23	147	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-19	148	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-14	152	204	No hit	No description
Pfam	PF00010	3.3E-15	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-14	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MFTVSQASSN ERNGAEDSIS NCSSYAANSG FTLWDESLEK KGHTRKQIAR DRANIRDAAG 60 AMGQWQGMEQ RSSFSSRSSL QTSGVKSQRQ SFMDMLKSAK GSSQEDDLDD DDEEEFVTKK 120 GDNTSTSQCQ RVDLKVKLDR KGGNEQKPNT PRSKHSATEQ RRRSKINDRF QMLRQLIPNS 180 DQKRDKASFL LEVIEYIHFL QEKVDKQESN HQQPPEGTVP VLTEAEAVDM DHHQCLLNRA 240 IETTSFPVSG QIESSQLCPV SSSDGAAMED EKLREEEEEE ELSVHKGTIS ISSVYSQGLL 300 KTLSETLQTS GVDLSRSSIS VQIKLSKQPQ KFIGGFDLGR KVEMKTKTMT RTVTSRRHGN 360 KRNSKKTTAS ETYNGETE

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MFTVSQASSN ERNGAEDSIS NCSSYAANSG FTLWDESLEK KGHTRKQIAR DRANIRDAAG  60
AMGQWQGMEQ RSSFSSRSSL QTSGVKSQRQ SFMDMLKSAK GSSQEDDLDD DDEEEFVTKK  120
GDNTSTSQCQ RVDLKVKLDR KGGNEQKPNT PRSKHSATEQ RRRSKINDRF QMLRQLIPNS  180
DQKRDKASFL LEVIEYIHFL QEKVDKQESN HQQPPEGTVP VLTEAEAVDM DHHQCLLNRA  240
IETTSFPVSG QIESSQLCPV SSSDGAAMED EKLREEEEEE ELSVHKGTIS ISSVYSQGLL  300
KTLSETLQTS GVDLSRSSIS VQIKLSKQPQ KFIGGFDLGR KVEMKTKTMT RTVTSRRHGN  360
KRNSKKTTAS ETYNGETE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g24120

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	3e-62	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438685.1	1e-145	PREDICTED: transcription factor BIM1-like isoform X2
Swissprot	Q9LEZ3	1e-82	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A1J3D7S8	1e-153	A0A1J3D7S8_NOCCA; Transcription factor BIM1
STRING	Bra029354.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18805	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.1	4e-81	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]