PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g23570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 319aa    MW: 35852.1 Da    PI: 7.921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g23570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-091057348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ ++d  + +a + +  +   +W++Ia ++  g+t +q+k+++ ++l
        Tp2g23570 10 SWSRDDDIAFERALTIYTDEtdnRWEKIAGCVT-GKTIEQIKEHYENLL 57
                     7*****************99************9.***********9986 PP
2Myb_DNA-binding40.75.4e-13114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +  ++G+g+W++I+r    +Rt+ q+ s+ qky
        Tp2g23570 114 AWTPDEHRQFLLGLDKYGKGDWRSISRNYVVTRTPTQVASHAQKY 158
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.667357IPR017877Myb-like domain
SMARTSM007171.7E-9759IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-11965IPR009057Homeodomain-like
CDDcd001672.66E-81057No hitNo description
PfamPF002498.7E-71057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-51158IPR009057Homeodomain-like
PROSITE profilePS5129415.942106163IPR017930Myb domain
SuperFamilySSF466891.15E-15108163IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-16111161IPR006447Myb domain, plants
SMARTSM007171.1E-9111161IPR001005SANT/Myb domain
CDDcd001671.27E-9114158No hitNo description
Gene3DG3DSA:1.10.10.603.4E-10114158IPR009057Homeodomain-like
PfamPF002495.4E-11114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGEKNSGSPS WSRDDDIAFE RALTIYTDET DNRWEKIAGC VTGKTIEQIK EHYENLLHDV  60
MMIESGCVPL PDYDLSGETN DKEKSISECD INRKCDYKQE GKPNLQQTRR KGIAWTPDEH  120
RQFLLGLDKY GKGDWRSISR NYVVTRTPTQ VASHAQKYYA RLNSKNKNKK RTSIHDVSEA  180
DSKSISTTQR PTTWQNTQAI QATSQPSLDH PTYVTPTILN TQATSQLSLN RQIYGTPTIW  240
NTQIASQQPT NVPLYGTPTI GQSMVGPIVL PFGTDMNCLA PPHMAYGVQH HPVPFSSVPG  300
VPFNIGSVPY NMTYLPTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15477577RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g23570
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619815.11e-147PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN69e-99SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D3AXZ81e-145A0A0D3AXZ8_BRAOL; Uncharacterized protein
STRINGBo2g160810.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-121Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]