PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g22060

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 271aa MW: 31027.2 Da PI: 6.9053

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g22060	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.6	9.5e-13	31	108	12	94
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++++ v+p +f+++ g + ++l ++g+sW+v l ++ +++ ++ ++ W eFv++n L +D++ F++++++ v Tp2g22060 31 SKSMRVIPEEFVRSTPGA--FEHRVVLSVRWGNSWQVWL--QRDKKGlFMEEEDWDEFVNDNFLGPNDVLFFTHEDTMFI--EV 108 56778******99666..3446***********..66666669999*******************7664333..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-15	16	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.45E-13	17	112	No hit	No description
SMART	SM01019	3.8E-15	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	20	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-10	30	108	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.1E-15	30	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-7	171	257	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-5	172	258	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.028	178	270	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MAPKSVFDML HENVSKPRFC KSLPLGENWS SKSMRVIPEE FVRSTPGAFE HRVVLSVRWG 60 NSWQVWLQRD KKGLFMEEED WDEFVNDNFL GPNDVLFFTH EDTMFIEVQI HKKDLHLFKE 120 INSTSFEAEP EPELLNPKPQ NSHPETPASA SASASARQGG APVQNPEQYL LNHKSPYFVK 180 TLTKKIDVLY VNHSVIKKYD LKFGPHKSTM YYLFPNEKHE ALTKIYGGSP CFSGWAAICR 240 KYNLKQGDNV VCELECSGGV VTAVRVHFTN E

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g22060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151073.1	1e-142	PREDICTED: B3 domain-containing protein At5g25470-like
Refseq	XP_013643746.1	1e-142	B3 domain-containing protein At5g25470-like
Refseq	XP_013663090.1	1e-142	B3 domain-containing protein At5g25470-like
Swissprot	Q1PDT6	1e-106	Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBL	M4D044	1e-141	M4D044_BRARP; Uncharacterized protein
STRING	Bra009842.1-P	1e-142	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	1e-107	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]