PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g19980

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 403aa MW: 44872.8 Da PI: 5.9123

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g19980	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.1e-33	232	286	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ Tp2g19980 232 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRT 286 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.486	229	289	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-17	230	286	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-30	230	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	232	286	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-11	234	285	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-21	320	366	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MTLANDFGYS TAMSSSFSAL HTTAEDRYRK LSNSFWSSSG QELMNNPVPH QVLSGGNSGG 60 YLFSSPSGFC NVSAVSTHGR SSQIQPHVSA LPSGRLAMQD CLLEAESPSL TNYHPQEFTD 120 PLEEFFDFSD HVPVPNPQAE SSVVRVVSSV VSHEKSEWQT WADQLISVDD GSEPNWSELL 180 GDPSPHNPNS QIPIPSSDVP RQEIIANQQH QVVSLEEKLS ARNSSVCAAT SKQRMRWTPE 240 LHEAFVEAVN QLGGSERATP KAVLKLLNNP GLTIYHVKSH LQKYRTARYK PETSEATGEA 300 QGKKMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRSLQLQI EKQGRYLQRM 360 FEKQEKLQEN KSSSPEVEFV LGTQTGDQTG SASASRKRSR EED

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MTLANDFGYS TAMSSSFSAL HTTAEDRYRK LSNSFWSSSG QELMNNPVPH QVLSGGNSGG  60
YLFSSPSGFC NVSAVSTHGR SSQIQPHVSA LPSGRLAMQD CLLEAESPSL TNYHPQEFTD  120
PLEEFFDFSD HVPVPNPQAE SSVVRVVSSV VSHEKSEWQT WADQLISVDD GSEPNWSELL  180
GDPSPHNPNS QIPIPSSDVP RQEIIANQQH QVVSLEEKLS ARNSSVCAAT SKQRMRWTPE  240
LHEAFVEAVN QLGGSERATP KAVLKLLNNP GLTIYHVKSH LQKYRTARYK PETSEATGEA  300
QGKKMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRSLQLQI EKQGRYLQRM  360
FEKQEKLQEN KSSSPEVEFV LGTQTGDQTG SASASRKRSR EED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-27	232	290	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00532	DAP	Transfer from AT5G29000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g19980

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020877765.1	0.0	protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	0.0	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	D7M706	0.0	D7M706_ARALL; Myb family transcription factor
STRING	Bostr.23151s0001.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]