PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18620
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 367aa    MW: 40431.8 Da    PI: 5.6286
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               +C+ ++e++   +C+++  +lC +C  + H+       H++
  Tp2g18620  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
               6*****************************65677777776 PP
2zf-B_box26.71.1e-084687441
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                +C++++ ++++  C d ++ lC++C  ++H+g    H++++
  Tp2g18620 46 LICERCNAQPASVRCSDERVSLCQNCDWSGHNGetshHKRQT 87
               68*****************************99999888776 PP
3CCT56.51e-19310353144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Tp2g18620 310 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 353
                999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000213.56E-7447No hitNo description
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.6134388IPR000315B-box-type zinc finger
CDDcd000211.81E-64788No hitNo description
SMARTSM003360.564888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951310352IPR010402CCT domain
PfamPF062031.0E-14310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWSGHNGET SHHKRQTINC YSGCPSSDEL ASIWSFCMDL DFSSAGQSAC  120
EQEMGLMTID EGPVEKPGVQ NVNEDQPGTS SGMDRSSVPE NTTLPKDLGV CEDDFCDNLV  180
MDEVDLAFEK YEELFGTAYN SSKDLFEHGG IGSLFEKHEG SIHGNAMQQP AGSNAASGDS  240
FVSCRTEPII CFSSQPAHSN ISFSGITGES NAGDVQDCGA SSAQQLSREP PPWCPPTSQE  300
IKATSHATTR NNAVIRYKEK KKARKFDKRV RYVSRKERAD VRRRVKGRFV KSGEAYDYDP  360
LSPARSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g18620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395204.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLV4MM150.0V4MM15_EUTSA; Uncharacterized protein
STRINGXP_006395204.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]