PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 277aa    MW: 31905.3 Da    PI: 6.7347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.87e-203178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++v+  G g+W+++a++ g++R++k+c++rw +yl
        Tp2g18110 31 KGPWTPEEDKLLAEYVTSNGEGRWSSVAKCAGLNRSGKSCRLRWVNYL 78
                     79********************************************97 PP

2Myb_DNA-binding49.97.1e-1684128147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
        Tp2g18110  84 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 128
                      7888******************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7892682IPR017930Myb domain
SuperFamilySSF466892.02E-3128125IPR009057Homeodomain-like
SMARTSM007175.6E-163080IPR001005SANT/Myb domain
PfamPF002492.1E-183178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-243285IPR009057Homeodomain-like
CDDcd001671.67E-113378No hitNo description
SMARTSM007171.8E-1383131IPR001005SANT/Myb domain
PROSITE profilePS5129419.95283133IPR017930Myb domain
PfamPF002491.0E-1384128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2386132IPR009057Homeodomain-like
CDDcd001672.14E-988128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MHDWAVDQVH HRNHDHDHDP YQQQQRQGCR KGPWTPEEDK LLAEYVTSNG EGRWSSVAKC  60
AGLNRSGKSC RLRWVNYLRP GLKRGQITPQ EEGIILELHS LWGNKWSTIA RYLPGRTDNE  120
IKNYWRTHYK KKEKSFSKQD KVKRSRKQLV LKPQPQPQPQ PQNQPSDQLV CQDLMNLDNE  180
ENIGSSFSYP TSVFSDQFHM PQSVPATSSD HSMIDEGNLW GSLWSLDEED PHRFGGGWEQ  240
RTAADIAEKF NGGEIEAPPC GSGEYNYNGF YTEGCIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24311327107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g18110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619948.11e-168PREDICTED: myb-related protein 340-like
TrEMBLA0A3P6DHJ51e-167A0A3P6DHJ5_BRAOL; Uncharacterized protein
STRINGXP_006395259.11e-155(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-127myb domain protein 121