PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g17680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 311aa    MW: 35234.8 Da    PI: 6.606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g17680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.3e-56201461129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                l pGfrFhPtdeel+++yL++kv ++ +++  +i+evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++  ++lv
  Tp2g17680  20 LLPGFRFHPTDEELISYYLRPKVLNNFFSA-IAIAEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK-AKSLV 117
                579************************999.88***************98999*****************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfykgrapkg+kt+Wvmheyrle
  Tp2g17680 118 GMKKTLVFYKGRAPKGVKTNWVMHEYRLE 146
                ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-6117170IPR003441NAC domain
PROSITE profilePS5100557.89220170IPR003441NAC domain
PfamPF023654.6E-3022145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDYEVSRIGE IVEDSEQIDL LPGFRFHPTD EELISYYLRP KVLNNFFSAI AIAEVDLNKV  60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FKAKSLVGMK  120
KTLVFYKGRA PKGVKTNWVM HEYRLEGKHA IDNLAETAKN EWVISRVFQK RADGINQFKP  180
VGLPSLIDSS PYLKSGGGGD SFAGSLSHVT CFSDQTTEDK GHLSELKDEC NLTMFGSSST  240
HLIPNIGSLL YSEPVFMQDN SSIMKMLRDS EETQFKKNLH DFGSSENASS WHGHDPSGSA  300
GQAEVDCFWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-511717214167NO APICAL MERISTEM PROTEIN
1ut4_B1e-511717214167NO APICAL MERISTEM PROTEIN
1ut7_A1e-511717214167NO APICAL MERISTEM PROTEIN
1ut7_B1e-511717214167NO APICAL MERISTEM PROTEIN
3swm_A2e-511717217170NAC domain-containing protein 19
3swm_B2e-511717217170NAC domain-containing protein 19
3swm_C2e-511717217170NAC domain-containing protein 19
3swm_D2e-511717217170NAC domain-containing protein 19
3swp_A2e-511717217170NAC domain-containing protein 19
3swp_B2e-511717217170NAC domain-containing protein 19
3swp_C2e-511717217170NAC domain-containing protein 19
3swp_D2e-511717217170NAC domain-containing protein 19
4dul_A1e-511717214167NAC domain-containing protein 19
4dul_B1e-511717214167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g17680
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382720.0KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609231.10.0PREDICTED: NAC domain-containing protein 59-like isoform X1
SwissprotQ9LJW31e-169NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A0D3E0M20.0A0A0D3E0M2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E6330.0A0A3P6E633_BRAOL; Uncharacterized protein
STRINGBo9g008770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-172NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]