PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g17650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 282aa    MW: 33021.7 Da    PI: 10.1992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g17650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-1658103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
        Tp2g17650  58 RGHWRISEDSQLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 103
                      789999**************************.***********996 PP
2Myb_DNA-binding48.61.8e-15111154247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ +E+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
        Tp2g17650 111 RAFSVDEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 154
                      6899*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.11653104IPR017930Myb domain
SMARTSM007172.0E-1157106IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2757151IPR009057Homeodomain-like
PfamPF002494.2E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2459111IPR009057Homeodomain-like
CDDcd001675.81E-1061102No hitNo description
PROSITE profilePS5129424.85105159IPR017930Myb domain
SMARTSM007171.0E-12109157IPR001005SANT/Myb domain
PfamPF002496.0E-12111154IPR001005SANT/Myb domain
CDDcd001672.99E-8112155No hitNo description
Gene3DG3DSA:1.10.10.603.8E-19112159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDFSCFQEYP FDLRCRGAFN GFGENNAVKF SNKRRMVKES DELKKQKKKQ RGSRGCSRGH  60
WRISEDSQLM ELVAVYGPQN WNHIAEKMQG RTGKSCRLRW FNQLDPRINK RAFSVDEEER  120
LLAAHRAFGN KWAMIAKLFN GRTDNALKNH WHVLMARKLR LQSTSYIRRL DGSAHKPTAD  180
HKTLNLSPGT IDDEDMNVEK NSWKMLKEET TNLKAQYLQE EYCSTRMPMQ GPHHHYSTFP  240
ADSLALTLHA TKAPKFREKK KKLRAKQELD CSCHYYQSFC LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-29581594105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g17650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727321e-138AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395314.11e-158transcription factor MYB117
SwissprotQ9SEZ48e-62MY105_ARATH; Transcription factor MYB105
TrEMBLV4K4Z81e-156V4K4Z8_EUTSA; Uncharacterized protein
STRINGXP_006395314.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-144myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]