PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g17550

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ZF-HD

Protein Properties

Length: 327aa MW: 35251.7 Da PI: 7.9899

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g17550	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.8	7.1e-35	43	100	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ Tp2g17550 43 AVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 100 689***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-17	30	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.9E-29	44	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.0E-31	45	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	46	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.78E-17	180	251	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	183	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.1E-26	192	249	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDMTPKSPEP ESETPTRIQP AKPISFSNGI IKRHNLHHHH PIAVTYKECL KNHAAAIGGH 60 ALDGCGEFMP SPSSTPSDPT SLKCAACGCH RNFHRRDPDD SSLASAVPPP SLPPSSTTAA 120 IEYQPHHRHH PPPPAPPLPR SPNSSSPPPI SSSYMLLALS GTNKTGGNSL PFSDLNFAAN 180 NLSTHHHTPG SRKRFRTKFS QNQKEKMHEF ADRIGWKIQK RDEDEVRDFC RDIGVDKGVL 240 KVWMHNNKNT FNNRRDQPFS GGTTTVHRID NGVAVSGGEN NNNNVDDDGV RGGNGLEHDI 300 HGGSGGRFES DSGGADGGNA NGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-20	191	250	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g17550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395326.1	1e-160	zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	1e-128	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A1J3G0A2	1e-168	A0A1J3G0A2_NOCCA; Zinc-finger homeodomain protein 9
STRING	XP_006395326.1	1e-159	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-92	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]