PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g17240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 36405.7 Da PI: 8.3298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl Tp2g17240 14 KGLWTAEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ +E+el++++++ G++ W++Iar+++ gRt++++k++w++ Tp2g17240 69 SFSSQEEELIIQCHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 110 799*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.406 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.32E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.44 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.75E-11 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 1.1E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRPPCCDKS NVKKGLWTAE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDSF SSQEEELIIQ CHRIIGSRWS SIARKLPGRT DNDVKNHWNT KLKKRLMKMG 120 IDPVTHKPVS QVLSEFRNIS GHGNSSEPLV RTFKTEPSNN SVLTQSNSAW EMIRNTTSHE 180 SYYNSPMIFT NPTSSEFQTS PFHLSSQSNH LLNGTTSSCS SSSSSTSITQ PNQGAQAPVT 240 TFCWSDYLLS DPVLPLSSQT KVVGSSATSN LTFAQNENFN GQAECSSQKL ATKGLGTCHS 300 ASSFVDDILD KDQEMLSQFP QLLNDFDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g17240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172871 | 0.0 | AC172871.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006L19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395361.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 0.0 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | V4KRL9 | 0.0 | V4KRL9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395361.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 0.0 | MYB family protein |
Publications ? help Back to Top | |||
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