PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g14980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 345aa    MW: 38691.4 Da    PI: 9.8608
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g14980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-1364112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Tp2g14980  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAHRFRG 112
                689***9788.8*********3.....5**********99************998 PP
2B3100.78.4e-32191295199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk+ ae+h      + ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++++l++
  Tp2g14980 191 FEKAVTPSDVGKLNRLVIPKHQAEKHfplpltDDVSVRGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQDQQLYI 290
                89******************************88999****************************************************98779999999 PP

                EEE-S CS
         B3  95 kvfrk 99 
                ++ +k
  Tp2g14980 291 GWKSK 295
                99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-864112IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-1764121IPR016177DNA-binding domain
CDDcd000181.69E-2464121No hitNo description
SMARTSM003808.8E-2865126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1965120IPR001471AP2/ERF domain
PROSITE profilePS5103219.98165120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-38183297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-29188296IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-27190283No hitNo description
SMARTSM010191.7E-25191296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.648191296IPR003340B3 DNA binding domain
PfamPF023628.4E-28191295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDAVSSVDES STSTYSIHTP AKMAPATARK SSAPASLYRM GSGSSVVLDS DNGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDIAAHRF RGRDAVTNFK  120
AEMASGNGDE EEVDFLNGHS KSEIVDMLRK HTYKEELEQR KRNREGNGTT KETAFTAVTA  180
ATGFKSAESL FEKAVTPSDV GKLNRLVIPK HQAEKHFPLP LTDDVSVRGM LLNFEDVNGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKRL CAGDLISFKR SNGQDQQLYI GWKSKSGSDH  300
DTGRIVMRLF GVDISSAKSR NDVVVKEETE MLSLRCNKKQ RLRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-6818730210124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g14980
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644813.10.0AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS060.0RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A397ZAC80.0A0A397ZAC8_BRACM; Uncharacterized protein
STRINGXP_006395630.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-175related to ABI3/VP1 1