PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g14270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 520aa    MW: 56735.6 Da    PI: 8.5644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g14270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.5e-34254310259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgs+fprsYY+Ct+  Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Tp2g14270 254 DDGYNWRKYGQKQVKGSDFPRSYYKCTHLACPVKKKVERSL-DGQVTEIIYKGQHNHD 310
                8****************************************.***************7 PP
2WRKY105.72.3e-33420478159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Tp2g14270 420 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 478
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-29245312IPR003657WRKY domain
PROSITE profilePS5081124.099248312IPR003657WRKY domain
SuperFamilySSF1182907.06E-26251312IPR003657WRKY domain
SMARTSM007743.6E-37253311IPR003657WRKY domain
PfamPF031061.1E-25254310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-37405480IPR003657WRKY domain
SuperFamilySSF1182908.63E-30412480IPR003657WRKY domain
PROSITE profilePS5081138.193415480IPR003657WRKY domain
SMARTSM007747.6E-39420479IPR003657WRKY domain
PfamPF031064.7E-26421478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAEKEKEEEQ HQQKQPLTSK SSTGASRPTI SLTPRPFGEM FFSGGVGFSG FSPGPMTLVS  60
NLFSDPDEFK SFSQLLAGAM ASPVAAVAAA AVVASVHQTS VSSVAGGDGG GSGGDVDPRF  120
KQNRPTGLMI TQPPAMFTVP PGLSPATLLD SPSFFGLFSP IQGAFGMTHQ QALAQVTAQA  180
VQGNNVHMQS QSEHPSSTQQ QQQTSVNEIP SFSSAPRSQA PAPVQDSSQV QRDNLEISVF  240
EHRSQPQNAD KPADDGYNWR KYGQKQVKGS DFPRSYYKCT HLACPVKKKV ERSLDGQVTE  300
IIYKGQHNHD PPQNNKRGNN NGSSKSSDIA TQFQTRNSSL NKTKRDQEAS QVTTTEQMSE  360
ASDSEEVGYA ESSVGGKHED EPDPKRRITE VRVSEPASSS HRTVTEPRII VQTTSEVDLL  420
DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG CGVRKHVERA ANDPKAVVTT YEGKHNHDVP  480
AARTSSHQSR PNNNLHNTST VNLNQQQPIA RLRLKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-45254481878Probable WRKY transcription factor 4
2lex_A6e-45254481878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g14270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395712.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV4KZY40.0V4KZY4_EUTSA; Uncharacterized protein
STRINGXP_006395712.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]