PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g13770

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ZF-HD

Protein Properties

Length: 322aa MW: 36425.7 Da PI: 8.7924

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g13770	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.2	1.7e-32	94	148	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAas+Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e Tp2g13770 94 IKYKECLKNHAASMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEG 148 79***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-26	94	152	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-29	94	146	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.4E-32	95	146	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.489	96	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.35E-20	220	292	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-31	227	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.2E-27	231	287	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEVASKEDHD MPIPINTTYG NSYGGHGHMI HRLHHDHRHH HPTNSTSPNP LVVHSNGNGP 60 GKNHDHPHHH HVGYNIMISS NNNNSDKKEK PVVIKYKECL KNHAASMGGN ATDGCGEFMP 120 SGEEGSIEAL TCSACNCHRN FHRREIEGEE KAFFSPYHHN QPPRKLMFHH QHKMIKSPLP 180 QQMIMPIGVA TAAGSNSESE DHMEEDGGRN LTFRQPPPPP PPYSYDGHNQ KKRFRTKFTQ 240 DQKEKMLSFA ERIGWKMQRQ EESVVQQFCQ EIGVSRRVLK VWMHNNKHSL SKKSNNVNKN 300 VEISASNNDI NKAPIGNLAS SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-23	231	289	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g13770

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483487.1	1e-170	PREDICTED: zinc-finger homeodomain protein 3-like
Refseq	XP_018483488.1	1e-170	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	1e-147	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	V4KST6	1e-168	V4KST6_EUTSA; Uncharacterized protein
STRING	XP_006395776.1	1e-168	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-127	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]