PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 412aa    MW: 46902.6 Da    PI: 6.6626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.5e-51531782128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +g
  Tp2g13690  53 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIG 151
                79***************************.89***************888889*********************************************** PP

        NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                lkktLvfy+g+apkg++t+W+m+eyrl
  Tp2g13690 152 LKKTLVFYSGKAPKGTRTSWIMNEYRL 178
                *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5652199IPR003441NAC domain
PROSITE profilePS5100556.27252199IPR003441NAC domain
PfamPF023653.0E-2554178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAIVSSTTSI ITMSNQVNNN NEKGLEEDAH RGGHENRVQN DDEADDHDHD MVMPGFRFHP  60
TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAM AAIGEKEWYF YVPRDRKYRN  120
GDRPNRVTTS GYWKATGADR MIRSETSRPI GLKKTLVFYS GKAPKGTRTS WIMNEYRLPH  180
HETEKYQKAE ISLCRVYKRP GVEDHPSLPR SLSTRHHNHN SSSSSRLALR QQQQHHSSSS  240
NHSDNNLNNN NNNNNLEKLS TEYSGDGSTT TTTNSNSDVT IAVANQNIYR PMPYGASNTP  300
IISTSNQDDD ETAIVDDLQR LVNYQISDGG NINHQYYQIA QQFHNQQQLN ANANALQLVA  360
AATTAALTPQ TQSALAMNMI PAGTIPNNAF WDMWNPLVPD GNKDHYTNIP FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-57431998165NO APICAL MERISTEM PROTEIN
1ut4_B7e-57431998165NO APICAL MERISTEM PROTEIN
1ut7_A7e-57431998165NO APICAL MERISTEM PROTEIN
1ut7_B7e-57431998165NO APICAL MERISTEM PROTEIN
3swm_A8e-574319911168NAC domain-containing protein 19
3swm_B8e-574319911168NAC domain-containing protein 19
3swm_C8e-574319911168NAC domain-containing protein 19
3swm_D8e-574319911168NAC domain-containing protein 19
3swp_A8e-574319911168NAC domain-containing protein 19
3swp_B8e-574319911168NAC domain-containing protein 19
3swp_C8e-574319911168NAC domain-containing protein 19
3swp_D8e-574319911168NAC domain-containing protein 19
4dul_A7e-57431998165NAC domain-containing protein 19
4dul_B7e-57431998165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435193.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A0D3E7K30.0A0A0D3E7K3_BRAOL; Uncharacterized protein
STRINGBo9g071690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]