PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g13570

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 681aa MW: 76384 Da PI: 5.042

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g13570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.6e-06	116	138	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ff++ G C Gd C+F+H Tp2g13570 116 PVPCVFFQK-GMCAKGDMCSFMHT 138 579****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0014	30	57	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	1.4E-10	32	84	No hit	No description
PROSITE profile	PS50103	9.545	34	58	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.399	60	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.092	62	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4E-5	113	139	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	113	140	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-4	115	138	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-6	115	138	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MFAPATQQQQ QQQQTNQSEP ASSAEEEALK WNTDCVYFLA SPLTCKKGAE CEYRHSEYAR 60 VNPRDCYYWL SGNCMNPKCG FRHPPLEGLL GNQGGAPAGS LKPSHAAAHP SVAKQPVPCV 120 FFQKGMCAKG DMCSFMHTPN PAGYKMQHSA EAKPAADPQF PKKPIENYTG EKKLTDASRA 180 VKAHVDISAA PRVTSAGLRD TRGVEGYIPK HVGYEPVVQK KVVRVPSFTD GNHSTQLLHK 240 YGSDDNNSFH NGKDADDVLR ESSPGFDVLV DNEARDSEYY HIEDGYGRRS QEGRNSLNEY 300 DPDFSAMADG DGEAFRDQRF DSYDRREERH AWGHRRVSSE RGDPLERRVY AEDERSENIL 360 ASDLRYRLAK QRKVNGTGSV GNHDYAAPDS SVERGYRDSR RNTPRESSIS SSRLQGRLKL 420 HERSNDDEAH FDRRTERGRD RSELSQGRLR DRIKGRLEEN HSGNQERGLR APWARRREME 480 DERSAFSAPK GIAETRSSKR EESKTETSLG KRKSLEEDHH PHKRSGDSFA APLPFSEILK 540 RKRAAASSGS SKNKDQTPHE TIAKEEAGDK TKLITEEKTE VVSEPNPTHK AELGEGTIME 600 EGEEVIGEEG EQVYEANEEE QAYEGDELNG EYYYDEGYEE DGEYAYEEGE EVVYAAEEGE 660 EDATAGGEAE GEEDNTVGML S

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MFAPATQQQQ QQQQTNQSEP ASSAEEEALK WNTDCVYFLA SPLTCKKGAE CEYRHSEYAR  60
VNPRDCYYWL SGNCMNPKCG FRHPPLEGLL GNQGGAPAGS LKPSHAAAHP SVAKQPVPCV  120
FFQKGMCAKG DMCSFMHTPN PAGYKMQHSA EAKPAADPQF PKKPIENYTG EKKLTDASRA  180
VKAHVDISAA PRVTSAGLRD TRGVEGYIPK HVGYEPVVQK KVVRVPSFTD GNHSTQLLHK  240
YGSDDNNSFH NGKDADDVLR ESSPGFDVLV DNEARDSEYY HIEDGYGRRS QEGRNSLNEY  300
DPDFSAMADG DGEAFRDQRF DSYDRREERH AWGHRRVSSE RGDPLERRVY AEDERSENIL  360
ASDLRYRLAK QRKVNGTGSV GNHDYAAPDS SVERGYRDSR RNTPRESSIS SSRLQGRLKL  420
HERSNDDEAH FDRRTERGRD RSELSQGRLR DRIKGRLEEN HSGNQERGLR APWARRREME  480
DERSAFSAPK GIAETRSSKR EESKTETSLG KRKSLEEDHH PHKRSGDSFA APLPFSEILK  540
RKRAAASSGS SKNKDQTPHE TIAKEEAGDK TKLITEEKTE VVSEPNPTHK AELGEGTIME  600
EGEEVIGEEG EQVYEANEEE QAYEGDELNG EYYYDEGYEE DGEYAYEEGE EVVYAAEEGE  660
EDATAGGEAE GEEDNTVGML S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g13570

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395804.1	0.0	zinc finger CCCH domain-containing protein 17
Swissprot	Q9ZUM0	0.0	C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBL	V4K6A2	0.0	V4K6A2_EUTSA; Uncharacterized protein
STRING	XP_006395804.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8968	12	15

Publications ? help Back to Top
Seok HY, et al. AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis. Plant Cell Physiol., 2016. 57(3): p. 603-15 [PMID:26858286] Seok HY, et al. Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response. Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959 [PMID:29548822]