PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 603aa    MW: 64619.8 Da    PI: 9.3515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0583105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ C+k F r  nL+ H r H
  Tp2g13490  83 FICEVCNKGFQREQNLQLHRRGH 105
                89*******************88 PP
2zf-C2H213.10.00029159181123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H +t+
  Tp2g13490 159 WKCEKCSKRYAVQSDWKAHSKTC 181
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-682105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.71E-782105No hitNo description
PfamPF121713.0E-583105IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005283105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355110124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.71E-7154179No hitNo description
SMARTSM00355130159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPHHQP PQPQQVPLEA PPQKKKRNQP  60
RTPNSDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEVK  120
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT  180
CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL AQESARHPTS LTSLPSHHFP YGQNTNNSNN  240
NTSSMILGLS HMGAPQNLDH QSGDVLRLGS GGGGGGGAAS RSSSDLIAAN ASGYFMQEQT  300
PGFHDQQDHH HHQHQQQGFL AASNNMKPSS MNFQQSLMQF SHDSHNSPSS NPFNLSFLSG  360
NNAVASATSN PNAGAVSSGN LMISNHFDGE NAVGGGGGGE GSTGLFPNNL MSSADRISSG  420
AVPSLFSSSM QNPNSTPHMS ATALLQKAAQ MGSTSSNNNN NGSNNSNNNN ASSILRSFGS  480
GMYGENESNL HDLMNSFSNP GATGNNVNGV DSPFGSYGGV NKGLNADKQS MTRDFLGVGQ  540
IVRSMSGSGG FQQQQQQQQQ QHGNNSRERV GSSSDSADRN SMNVNPGGGP ASSPPYGIHH  600
ASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34155216364Zinc finger protein JACKDAW
5b3h_F8e-34155216364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2229240.0HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123129.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL30.0IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A397Y3X10.0A0A397Y3X1_BRACM; Uncharacterized protein
STRINGBra040974.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.10.0indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]