PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g13380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 440aa MW: 49255.5 Da PI: 8.9105 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H Tp2g13380 71 YICEICNQGFQRDQNLQMHRRRH 93 89********************9 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Tp2g13380 149 WVCERCSKGYAVQSDYKAHLKTC 171 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.56E-5 | 70 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 113 | 143 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-4 | 140 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.56E-5 | 144 | 169 | No hit | No description |
SMART | SM00355 | 100 | 149 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009590 | Biological Process | detection of gravity | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010031 | Biological Process | circumnutation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MLDAAVSNKN TSNTCCVVSS SSDPFLSSSE TGVTTTNTST QKRKRRPAGT PDPDAEVVSL 60 SPRTLLESDR YICEICNQGF QRDQNLQMHR RRHKVPWKLL KRDNNIEVKK RVYVCPEPTC 120 LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKGYAV QSDYKAHLKT CGTRGHSCDC 180 GRVFSRVESF IEHQDNCSVR KVHREPPPPP QPTVTVPACS SRTASTASTP SSETNYGGTV 240 AVATPLPLEG RPIHMTNPPS ILTHSSNNLN LELELLPLRP NQNPNQENQQ QKVKEPSHHH 300 NHHDTTNLNL SIAPSSSSFH HYNNFDRIKE IMASEQIMKI AMKEKAYAEE AKREAKRQRE 360 MAENEFVNAK KIRQQAQAEL ERAKLLKEQS MKKISSTIMQ VTCQTCKGQF QAVAVSAAAA 420 DETSLVVSYM SSANTDGEAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 145 | 199 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 145 | 199 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00254 | DAP | Transfer from AT2G01940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g13380 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM222924 | 0.0 | HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114218.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Refseq | XP_013713043.1 | 0.0 | protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 0.0 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3P5YCK9 | 0.0 | A0A3P5YCK9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DLQ1 | 0.0 | M4DLQ1_BRARP; Uncharacterized protein | ||||
STRING | Bostr.0556s0022.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 0.0 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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