PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 401aa    MW: 45223.2 Da    PI: 7.6036
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.32.7e-26196249155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k r++W+ eLH++Fv+a ++L G++kA+Pk+ilelm+v++L++e+v+SHLQkYRl
  Tp2g13220 196 KSRVVWSMELHQQFVNATNHL-GIDKAVPKRILELMNVPSLSRENVASHLQKYRL 249
                68*******************.********************************8 PP
2Response_reg70.47.3e-24131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++   ++ Ga 
     Tp2g13220  13 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALNILRERKgcFDLVLSDVHMPGMNGYKLLQHVGLEM-DLPVIMMSVDGRTATVMTGINNGAC 107
                   89*********************.*******************************************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ peel +
     Tp2g13220 108 DYLIKPIRPEELKN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.6E-1411393IPR017053Response regulator B-type, plant
SuperFamilySSF521728.97E-359146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-4010149No hitNo description
SMARTSM004485.2E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.83912127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.60E-2614126No hitNo description
Gene3DG3DSA:1.10.10.601.4E-27193254IPR009057Homeodomain-like
SuperFamilySSF466892.51E-18194253IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24196249IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTISDQFPSG LRVLVVDDDA SCLIILEKML LRLMYQVTIC SQADVALNIL RERKGCFDLV  60
LSDVHMPGMN GYKLLQHVGL EMDLPVIMMS VDGRTATVMT GINNGACDYL IKPIRPEELK  120
NIWQHVVRRK CTLNKQLRRY SQALEDNKNF SSSLETVFSV SECSEGSFKR RKNKRRVDKE  180
DHEEDDLLDP GNNSKKSRVV WSMELHQQFV NATNHLGIDK AVPKRILELM NVPSLSRENV  240
ASHLQKYRLY LKRLSGVASQ SRDAESMERY ENIQALVSSG QIQPQALAAL YGRPIDNHMS  300
GGLGVWIPSD NHLGGSQNEN FPIDVSSTSN RYFGALNGPV SVATSTAVHG LSSSANLRQQ  360
RDDFNNYNTD YRIRQGNGSS VNGESWIDLQ DRKRIIDIEH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20195255464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532220.0AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616214.10.0PREDICTED: two-component response regulator ARR14 isoform X1
RefseqXP_013729247.10.0two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JD470.0A0A078JD47_BRANA; Two-component response regulator
STRINGBo2g134560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14