PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g12030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 308aa    MW: 34785.7 Da    PI: 4.5831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g12030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20159209255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+ 
  Tp2g12030 159 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRR 209
                8********.**********96655..************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.02E-32158217No hitNo description
Gene3DG3DSA:3.30.730.103.5E-32158218IPR001471AP2/ERF domain
PROSITE profilePS5103223.815159217IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22159219IPR016177DNA-binding domain
PfamPF008472.5E-14159209IPR001471AP2/ERF domain
SMARTSM003801.3E-34159223IPR001471AP2/ERF domain
PRINTSPR003671.2E-10160171IPR001471AP2/ERF domain
PRINTSPR003671.2E-10183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MANPSEVSAL WFIEKHLLDE VSPVATDRWT THESAATESS SDSSSIIFGS SSPPDFDSFA  60
PIDFSLSEIK PEIIDLSTPR SFMDFTSEVS VSDFDLKPSY QNEYQFESEI KSEIPSASED  120
SQSNRKPPLK ISLQNKTEWI QFKPEVTKPS QAIAEENKHY RGVRQRPWGK FAAEIRDPNK  180
RGSRIWLGTF DTAIEAARAY DEAAFRLRRS KAILNFPLEV GKWKPRSDAA DGNEKKRKRD  240
EFDDEDVTVV VEKVLKTEQN VCAEETSSLG TSNLTELCDW DLTGFLNFPL LSPLSPHPSF  300
SYSQLTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29158220163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-29156220266ATERF1
3gcc_A1e-29156220266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g12030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398420.21e-153ethylene-responsive transcription factor 5
SwissprotO803411e-137EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLV4LJ861e-150V4LJ86_EUTSA; Uncharacterized protein
STRINGXP_006398420.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-93ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]