PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp2g11950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 486aa MW: 54541.3 Da PI: 6.1015 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.8e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Tp2g11950 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-12 | 5 | 46 | No hit | No description |
CDD | cd00202 | 6.53E-18 | 6 | 63 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.5E-9 | 244 | 335 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEGDEIEIE 60 DHKAQKMMMI KGMPVNKKIP KRKSYQENFT VKRTNLEFSN GFKMKALDEE ASNRSSSGSV 120 VSNSESCDQS NAWETTFPCK KRTCVGRPKA ASSVEKLTKD LYSILQEQQS SCLSGSSEED 180 LLFENESPMV IGHGSVLMRD PHSGAREEES EASSLLVESS KSSSTHSIYR GQRSLNFGGK 240 AIKQEQLKRT KSQVLGRQGL PLCNIDLKDV FNFDEFIEKF TEEEQQKLMK LLPEVDSVDR 300 PDSLGSMFES SQFKENFSLF QQLVADGVFE TSSSTSSSGS KLEDFKRLAK LALSDPNKSH 360 LLESYRMLKE QRKEIEDSVT TTSKGSIPNP SSNRRLVTIE RPCESLNQNF SETRVVMKSP 420 KEVMRIRSKH METEEIIENS VSSFEPMSYS GSMAFSYEDN DISDQDLLLD VPSNGSFPQA 480 ELLHMI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp2g11950 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT020259 | 0.0 | BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds. | |||
GenBank | BT020450 | 0.0 | BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494936.1 | 0.0 | PREDICTED: GATA transcription factor 27 isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | D7MPX3 | 0.0 | D7MPX3_ARALL; Zinc finger family protein | ||||
STRING | XP_010494936.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |