PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g11680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 813aa    MW: 90591.9 Da    PI: 5.4748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g11680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.4e-21113168156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Tp2g11680 113 KKRYHRHTNRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 168
                688999***********************************************998 PP
2START139.63.2e-443205541206
                HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
      START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                e+a ++ qel k+ + eep+Wvk         e    + +l+++e  +              +  ea++a +vv+m++ +lv  +l+   +W+e++    
  Tp2g11680 320 EIAVSCVQELTKMCDTEEPLWVKKKsdkmgggE----MLCLSEEEYMRLfpwpmenhknkreFCREASKANAVVIMNSITLVDAFLNAD-KWSEMFCsiv 414
                578899*******************55533331....3444444333336666778889999889************************.******9999 PP

                .EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS
      START  78 .kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164
                 +a+t++ issg     g l lm+aelq+lsplvp R+ +f+Ry +q  + g w+ivd  +ds  ++ +     +++v +  + pSg++i++++ng+s+v
  Tp2g11680 415 aRAKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDSFHDQIQplstnTPHVYK--RKPSGCIIQDMPNGYSQV 512
                9**********************************************99**********999654433233666677776..****************** PP

                EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                 wvehv++++++ h+ +   vksg+a+ga++w+  lqrqce+
  Tp2g11680 513 KWVEHVEVNESHMHETFAEYVKSGMAFGASRWLDVLQRQCER 554
                ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-20103171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-21107176IPR009057Homeodomain-like
PROSITE profilePS5007117.767110170IPR001356Homeobox domain
SMARTSM003896.4E-19111174IPR001356Homeobox domain
CDDcd000862.99E-19113171No hitNo description
PfamPF000462.3E-18113168IPR001356Homeobox domain
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PROSITE profilePS5084842.417311557IPR002913START domain
SuperFamilySSF559614.12E-30312555No hitNo description
CDDcd088752.35E-101315553No hitNo description
SMARTSM002347.7E-25320554IPR002913START domain
PfamPF018528.3E-37321554IPR002913START domain
SuperFamilySSF559613.43E-14569794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MLTIGEESVM TSDNRFASPP PPSSSSPATI QNPNFNFIPF NSFSSLIPKD EHGMMSMSLM  60
MMMGDGAVEE MMENGSAGGS FGSGSEQAED PKSGNEFDVN ELQDDEQPPP AKKKRYHRHT  120
NRQIQEMEAL FKENPHPDDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR  180
AENDNLKAEN SHLQAELQCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCVASRY  240
TGRPMQSMAS SQPLINPPSE LTHHQPSLEL DMSVYAGNFP EHPCPDLMLL PPQDTACFFP  300
DQTNNNNMLL ADEEKVIAME IAVSCVQELT KMCDTEEPLW VKKKSDKMGG GEMLCLSEEE  360
YMRLFPWPME NHKNKREFCR EASKANAVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV  420
QIISSGVSGA SGSLLLMYAE LQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD  480
QIQPLSTNTP HVYKRKPSGC IIQDMPNGYS QVKWVEHVEV NESHMHETFA EYVKSGMAFG  540
ASRWLDVLQR QCERMAMIRS AEARRNMMKL SQRMMKTFCV NISTSYGQSW TALSETTKDT  600
VRITTRKVCE PGQPTGVVLA AVSTTWLPFS HLKVFDLLRD QHHHSLLEVL FNGNSPHEVA  660
HIANGSHPGN CISLLRINVA SNSWHNVELM LQESCIDNSG SLIVYSSVDV DSIQHAMNGE  720
DPSSIPLLPL GFSVVPVFPP DQAEGISVNS HPPPSCLLTV GIQVLASNVP TAKPNLSTVT  780
TINNHLCSIV NQITSVLSST VSSSAAAAKQ EVM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g11680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133941e-137AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBankCP0026881e-137CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398384.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_024011151.10.0homeobox-leucine zipper protein HDG5 isoform X1
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLV4LBR70.0V4LBR7_EUTSA; Uncharacterized protein
STRINGXP_006398384.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]