PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g11500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 269aa MW: 29986.9 Da PI: 9.807 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.6e-16 | 77 | 128 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ Tp2g11500 77 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 128 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.73E-14 | 75 | 131 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-16 | 75 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.031 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-13 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-14 | 77 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MTLEALSSNG LLNFLLSENL TPTPFKSEND IIVSQSTIPA ISHQEPSSRQ PAPVGRGKKR 60 RRRKPRVCKN EEEAENQRMT HIAVERNRRR QMNQHLSVLR SLMPQPFAQK GDQASIVGGA 120 IDFIKELEHQ LVSLEAQKLQ NAKLNQTVTS STSQDSNGEP ENPNQPCSLS LSQFFLHSYD 180 PNQENRNGST SSVKTAMEDL EVTLIETHAN IRILSRRIGF RWTTVATTGP PQLSKLVAAL 240 QSLSLSVLHL SVTTLDTFAI YSISTKVNY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 63 | KKRRRRK |
2 | 57 | 64 | KKRRRRKP |
3 | 58 | 63 | KRRRRK |
4 | 59 | 65 | RRRRKPR |
5 | 77 | 88 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g11500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353555 | 0.0 | AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398364.1 | 1e-151 | transcription factor bHLH71 | ||||
Swissprot | Q56XR0 | 1e-137 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | A0A397Y2Z8 | 1e-151 | A0A397Y2Z8_BRACM; Uncharacterized protein | ||||
TrEMBL | E4MYF8 | 1e-150 | E4MYF8_EUTHA; mRNA, clone: RTFL01-52-J01 | ||||
STRING | XP_006398364.1 | 1e-151 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10389 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 1e-117 | beta HLH protein 71 |
Publications ? help Back to Top | |||
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