PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g10600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 351aa    MW: 40229.8 Da    PI: 5.9226
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g10600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++ ++++sws+n++sf+v++++ef++++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +l+++i+
     Tp2g10600  14 FLIKTYDMVDDSSSDSIVSWSDNNKSFIVKNPDEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKIDPEK---------WEFANDDFVRGQPHLMKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Tp2g10600 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.08E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDETNGGSSS LPPFLIKTYD MVDDSSSDSI VSWSDNNKSF IVKNPDEFSR DLLPRFFKHK  60
NFSSFIRQLN TYGFRKIDPE KWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNVQSQNPL  120
TESERQSMKD QIERLKREKE VLLVDLQNQE LERKGFELQV TALKDRLRHM EQRQTSIVSF  180
VSQVLEKPGL SLNLETHERK KRKLQESSLP PSRPHAEQVE NLESSLTFME NLVAKSCDKS  240
GGVQSSSMDL DVNESISCAE SLSIGDTRPK STKIDMNSEP VTTAAPKTGV NDVFWEQCLT  300
ENPGSIEQQE VQSERRDVDV RNGDSDNSNK IGDGRTFWWN ARNVNNITER A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-22610312120Heat shock factor protein 1
5d5u_B3e-22710322129Heat shock factor protein 1
5d5v_B3e-22710322129Heat shock factor protein 1
5d5v_D3e-22710322129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g10600
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535290.0AK353529.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-49-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114395.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_009114396.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_013661865.10.0heat stress transcription factor A-4c-like
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A397XX630.0A0A397XX63_BRACM; Uncharacterized protein
TrEMBLM4DM630.0M4DM63_BRARP; Uncharacterized protein
STRINGBra017595.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]